2G50

The location of the allosteric amino acid binding site of muscle pyruvate kinase.

2G50 の概要

• エントリーDOI: 10.2210/pdb2g50/pdb
• 分子名称: Pyruvate kinase isozymes M1/M2, MANGANESE (II) ION, POTASSIUM ION, ... (10 entities in total)
• 機能のキーワード: allostery, pyruvate kinase, glycolysis, kinase, phosphoryl transfer, transferase
• 由来する生物種: Oryctolagus cuniculus (rabbit)
• 細胞内の位置: Cytoplasm : P11974
• タンパク質・核酸の鎖数: 8
• 化学式量合計: 470798.58

構造登録者

Holyoak, T.,Williams, R.,Fenton, A.W. (登録日: 2006-02-22, 公開日: 2006-05-09, 最終更新日: 2024-04-03)

主引用文献

Williams, R.,Holyoak, T.,McDonald, G.,Gui, C.,Fenton, A.W.
Differentiating a Ligand's Chemical Requirements for Allosteric Interactions from Those for Protein Binding. Phenylalanine Inhibition of Pyruvate Kinase.
Biochemistry, 45:5421-5429, 2006

PubMed Abstract: The isoform of pyruvate kinase from brain and muscle of mammals (M(1)-PYK) is allosterically inhibited by phenylalanine. Initial observations in this model allosteric system indicate that Ala binds competitively with Phe, but elicits a minimal allosteric response. Thus, the allosteric ligand of this system must have requirements for eliciting an allosteric response in addition to the requirements for binding. Phe analogues have been used to dissect what chemical properties of Phe are responsible for eliciting the allosteric response. We first demonstrate that the l-2-aminopropanaldehyde substructure of the amino acid ligand is primarily responsible for binding to M(1)-PYK. Since the allosteric response to Ala is minimal and linear addition of methyl groups beyond the beta-carbon increase the magnitude of the allosteric response, we conclude that moieties beyond the beta-carbon are primarily responsible for allostery. Instead of an all-or-none mechanism of allostery, these findings support the idea that the bulk of the hydrophobic side chain, but not the aromatic nature, is the primary determinant of the magnitude of the observed allosteric inhibition. The use of these results to direct structural studies has resulted in a 1.65 A structure of M(1)-PYK with Ala bound. The coordination of Ala in the allosteric amino acid binding site confirms the binding role of the l-2-aminopropanaldehyde substructure of the ligand. Collectively, this study confirms that a ligand can have chemical regions specific for eliciting the allosteric signal in addition to the chemical regions necessary for binding.

PubMed: 16634623
DOI: 10.1021/bi0524262

実験手法

X-RAY DIFFRACTION (1.65 Å)