2FP9

Crystal structure of Native Strictosidine Synthase

Summary for 2FP9

• Entry DOI: 10.2210/pdb2fp9/pdb
• Related: 2FP8 2FPB 2FPC
• Descriptor: Strictosidine synthase, L(+)-TARTARIC ACID (3 entities in total)
• Functional Keywords: six bladed beta propeller fold, str1, synthase, lyase
• Biological source: Rauvolfia serpentina (serpentwood)
• Total number of polymer chains: 2
• Total formula weight: 71832.05

Authors

Panjikar, S. (deposition date: 2006-01-16, release date: 2006-05-23, Last modification date: 2024-11-20)

Primary citation

Ma, X.,Panjikar, S.,Koepke, J.,Loris, E.,Stockigt, J.
The structure of Rauvolfia serpentina strictosidine synthase is a novel six-bladed beta-propeller fold in plant proteins
Plant Cell, 18:907-920, 2006

PubMed Abstract: The enzyme strictosidine synthase (STR1) from the Indian medicinal plant Rauvolfia serpentina is of primary importance for the biosynthetic pathway of the indole alkaloid ajmaline. Moreover, STR1 initiates all biosynthetic pathways leading to the entire monoterpenoid indole alkaloid family representing an enormous structural variety of approximately 2000 compounds in higher plants. The crystal structures of STR1 in complex with its natural substrates tryptamine and secologanin provide structural understanding of the observed substrate preference and identify residues lining the active site surface that contact the substrates. STR1 catalyzes a Pictet-Spengler-type reaction and represents a novel six-bladed beta-propeller fold in plant proteins. Structure-based sequence alignment revealed a common repetitive sequence motif (three hydrophobic residues are followed by a small residue and a hydrophilic residue), indicating a possible evolutionary relationship between STR1 and several sequence-unrelated six-bladed beta-propeller structures. Structural analysis and site-directed mutagenesis experiments demonstrate the essential role of Glu-309 in catalysis. The data will aid in deciphering the details of the reaction mechanism of STR1 as well as other members of this enzyme family.

PubMed: 16531499
DOI: 10.1105/tpc.105.038018

Experimental method

X-RAY DIFFRACTION (2.96 Å)