2DVA

Crystal structure of peanut lectin GAL-BETA-1,3-GALNAC-ALPHA-O-ME (Methyl-T-antigen) complex

Summary for 2DVA

Related2PEL 2TEP 1V6I 1V6J 1V6K 2DH1 2DV9 2DVB 2DVD 2DVF 2DVG
DescriptorGalactose-binding lectin, BETA-D-GALACTOSE, ALPHA-METHYL-N-ACETYL-D-GALACTOSAMINE, ... (7 entities in total)
Functional Keywordslegume lectin, agglutinin, open quaternary structure, carbohydrate specificity, sugar binding protein
Biological sourceArachis hypogaea (peanut)
Total number of polymer chains4
Total molecular weight103069.57
Authors
Natchiar, S.K.,Srinivas, O.,Mitra, N.,Surolia, A.,Jayaraman, N.,Vijayan, M. (deposition date: 2006-07-30, release date: 2006-11-07, Last modification date: 2011-07-13)
Primary citation
Natchiar, S.K.,Srinivas, O.,Mitra, N.,Surolia, A.,Jayaraman, N.,Vijayan, M.
Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin
ACTA CRYSTALLOGR.,SECT.D, 62:1413-1421, 2006
PubMed: 17057347 (PDB entries with the same primary citation)
DOI: 10.1107/S0907444906035712
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.250100.2%2.2%1.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2dva
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Molmil generated image of 2dva
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Molmil generated image of 2dva
rotated about y axis by 90°