2B92

Crystal-structure of the N-terminal Large GTPase Domain of human Guanylate Binding protein 1 (hGBP1) in complex with GDP/AlF3

2B92 の概要

• エントリーDOI: 10.2210/pdb2b92/pdb
• 関連するPDBエントリー: 1DG3 1F5N 2B8W 2BC9 2D4H
• 分子名称: Interferon-induced guanylate-binding protein 1, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE, ... (5 entities in total)
• 機能のキーワード: protein- guanine nucleotide complex, signaling protein
• 由来する生物種: Homo sapiens (human)
• 細胞内の位置: Cytoplasm : P32455
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 75259.86

構造登録者

Ghosh, A.,Praefcke, G.J.K.,Renault, L.,Wittinghofer, A.,Herrmann, C. (登録日: 2005-10-10, 公開日: 2006-03-07, 最終更新日: 2023-08-23)

主引用文献

Ghosh, A.,Praefcke, G.J.,Renault, L.,Wittinghofer, A.,Herrmann, C.
How guanylate-binding proteins achieve assembly-stimulated processive cleavage of GTP to GMP.
Nature, 440:101-104, 2006

PubMed Abstract: Interferons are immunomodulatory cytokines that mediate anti-pathogenic and anti-proliferative effects in cells. Interferon-gamma-inducible human guanylate binding protein 1 (hGBP1) belongs to the family of dynamin-related large GTP-binding proteins, which share biochemical properties not found in other families of GTP-binding proteins such as nucleotide-dependent oligomerization and fast cooperative GTPase activity. hGBP1 has an additional property by which it hydrolyses GTP to GMP in two consecutive cleavage reactions. Here we show that the isolated amino-terminal G domain of hGBP1 retains the main enzymatic properties of the full-length protein and can cleave GDP directly. Crystal structures of the N-terminal G domain trapped at successive steps along the reaction pathway and biochemical data reveal the molecular basis for nucleotide-dependent homodimerization and cleavage of GTP. Similar to effector binding in other GTP-binding proteins, homodimerization is regulated by structural changes in the switch regions. Homodimerization generates a conformation in which an arginine finger and a serine are oriented for efficient catalysis. Positioning of the substrate for the second hydrolysis step is achieved by a change in nucleotide conformation at the ribose that keeps the guanine base interactions intact and positions the beta-phosphates in the gamma-phosphate-binding site.

PubMed: 16511497
DOI: 10.1038/nature04510

実験手法

X-RAY DIFFRACTION (3.2 Å)