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24DJ

Structural snapshots of F1-ATPase catalysis in drug resistant Acinetobacter baumannii reveal novel therapeutic targets - Conformation 1b

Summary for 24DJ
Entry DOI10.2210/pdb24dj/pdb
EMDB information69446
DescriptorATP synthase subunit beta, ATP synthase subunit alpha, ATP synthase epsilon chain, ... (8 entities in total)
Functional Keywordsatp hydrolysis, f1-atpase, hydrolase
Biological sourceAcinetobacter baumannii AB5075
More
Total number of polymer chains8
Total formula weight366675.09
Authors
Le, K.C.M.,Gruber, G. (deposition date: 2026-02-28, release date: 2026-10-28)
Primary citationLe, K.C.M.,Marzinek, J.K.,Mathiyazakan, V.,Bond, P.J.,Gruber, G.
Structural Snapshots of F 1 -ATPase Catalysis in Drug Resistant Acinetobacter baumannii Reveal Novel Therapeutic Targets.
Faseb J., 40:e72385-e72385, 2026
Cited by
PubMed Abstract: Gram-negative Acinetobacter baumannii, one of the most critical priority pathogens, has developed multiple defense mechanisms, including upregulation of drug efflux pumps powered by the proton-motive force (pmf) or ATP. As a nonfermenting bacterium, it relies on oxidative phosphorylation, in which the F-ATP synthase, composed of an F-ATPase (α:β:γ:ε) and F-domain (a:b:c), synthesizes ATP, the cell's currency of life. Here, we present cryo-electron microscopy structures of the F-ATPase captured during ATP synthesis, revealing concerted conformational changes within the α:β-catalytic head that trigger structural transitions of subunit ε and twisting of the γ:ε central stalk, coupled with spontaneous ATP formation. Molecular dynamics simulations validate and expand the ensemble of structural rearrangements underlying the rotary mechanism. The resolved intermediate states of the ε subunit reveal its role as a molecular gear, regulating ATP synthesis while simultaneously inhibiting ATP hydrolysis, essential for the pathogen to prevent wastage of ATP. These structural snapshots identify novel therapeutic targets and pave the way for rational design of selective inhibitors.
PubMed: 42891652
DOI: 10.1096/fj.202602735R
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (3.24 Å)
Structure validation

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PDB entries from 2026-10-28

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