1ZDK

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

1ZDK の概要

• エントリーDOI: 10.2210/pdb1zdk/pdb
• 分子名称: RNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3'), PROTEIN (MS2 PROTEIN CAPSID) (3 entities in total)
• 機能のキーワード: complex (coat protein-rna), coat protein, rna-binding, viral protein capsid, rna fragment, icosahedral virus, virus-rna complex, virus/rna
• 由来する生物種: Enterobacterio phage MS2; 詳細
• 細胞内の位置: Virion (Potential): P03612
• タンパク質・核酸の鎖数: 5
• 化学式量合計: 53338.74

構造登録者

Grahn, E.,Stonehouse, N.J.,Valegard, K.,Vandenworm, S.,Liljas, L. (登録日: 1998-12-04, 公開日: 1998-12-07, 最終更新日: 2024-05-22)

主引用文献

Grahn, E.,Stonehouse, N.J.,Murray, J.B.,van den Worm, S.,Valegard, K.,Fridborg, K.,Stockley, P.G.,Liljas, L.
Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements.
RNA, 5:131-138, 1999

PubMed Abstract: The coat protein of bacteriophage MS2 is known to bind specifically to an RNA hairpin formed within the MS2 genome. Structurally this hairpin is built up by an RNA double helix interrupted by one unpaired nucleotide and closed by a four-nucleotide loop. We have performed crystallographic studies of complexes between MS2 coat protein capsids and four RNA hairpin variants in order to evaluate the minimal requirements for tight binding to the coat protein and to obtain more information about the three-dimensional structure of these hairpins. An RNA fragment including the four loop nucleotides and a two-base-pair stem but without the unpaired nucleotide is sufficient for binding to the coat protein shell under the conditions used in this study. In contrast, an RNA fragment containing a stem with the unpaired nucleotide but missing the loop nucleotides does not bind to the protein shell.

PubMed: 9917072
DOI: 10.1017/S1355838299981645

実験手法

X-RAY DIFFRACTION (2.86 Å)