1ZDH

MS2 COAT PROTEIN/RNA COMPLEX

Summary for 1ZDH

DescriptorRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3'), PROTEIN (BACTERIOPHAGE MS2 COAT PROTEIN) (3 entities in total)
Functional Keywordscomplex (coat protein-rna), coat protein, rna-binding, viral protein capsid, rna fragment, icosahedral virus, virus-rna complex, virus/rna
Biological sourceEnterobacterio phage MS2
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Cellular locationVirion  P03612
Total number of polymer chains5
Total molecular weight53338.74
Authors
Valegard, K.,Van Den Worm, S.,Liljas, L. (deposition date: 1996-09-24, release date: 1997-04-21, Last modification date: 2017-02-15)
Primary citation
Valegard, K.,Murray, J.B.,Stonehouse, N.J.,van den Worm, S.,Stockley, P.G.,Liljas, L.
The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions.
J.Mol.Biol., 270:724-738, 1997
PubMed: 9245600 (PDB entries with the same primary citation)
DOI: 10.1006/jmbi.1997.1144
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.7 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRNA backbone0.17390.8%6.9%0.57MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1zdh
no rotation
Molmil generated image of 1zdh
rotated about x axis by 90°
Molmil generated image of 1zdh
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 1zdh
no rotation
Molmil generated image of 1zdh
rotated about x axis by 90°
Molmil generated image of 1zdh
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1zdh.pdb1.gz [4.22 MB])