1WZ4
Solution Conformation of adr subtype HBV Pre-S2 Epitope
Summary for 1WZ4
| Entry DOI | 10.2210/pdb1wz4/pdb |
| NMR Information | BMRB: 6557 |
| Descriptor | Major surface antigen (1 entity in total) |
| Functional Keywords | helix turn helix, gene regulation |
| Cellular location | Virion membrane (By similarity): P03140 |
| Total number of polymer chains | 1 |
| Total formula weight | 2520.82 |
| Authors | |
| Primary citation | Chi, S.W.,Kim, D.H.,Kim, J.S.,Lee, M.K.,Han, K.H. Solution conformation of an immunodominant epitope in the hepatitis B virus preS2 surface antigen. Antiviral Res., 72:207-215, 2006 Cited by PubMed Abstract: We have determined the solution conformation of the major B cell epitope (residues 123-145, adrl23 hereafter) in the preS2 region of hepatitis B virus known to be associated with infection neutralization. The adrl23 shows an "L" shaped helix-turn-helix topology with two beta-turns formed by residues Ala(130)-Asp(133) and Asp(133)-Val(136) intervening the N- and C-terminal helices. The N-terminal alpha-helix consists of residues Ser(124)-Gln(129) whereas the C-terminal 3(10) helix is formed by residues Val(136)-Tyr(140). The beta-turns overlap partially with the putative "conformational" epitope. The overall topology of adrl23 is primarily maintained by hydrophobic interactions involving Phe(127), Leu(131), Leu(132), Val(136), and Tyr(140) that are clustered on one side of the molecule. An additional hydrophobic stabilization comes from Phe(141) that is buried inside the concave side of the molecule. A network of hydrogen bonds formed among Thr(125), His(128), and Arg(137) further contribute to the "boomerang-shaped" architecture of adrl23. The N-terminus of adrl23 is immobile due to a hydrogen bond between the N-terminal amide proton of Asn(123) and the hydroxyl oxygen of Thr(126). The side chains of Asp(133), Arg(135), Val(136), Leu(139), and Tyr(140) that were shown to be important for binding to a monoclonal antibody H8 mAb are surface exposed. PubMed: 16872688DOI: 10.1016/j.antiviral.2006.06.009 PDB entries with the same primary citation |
| Experimental method | SOLUTION NMR |
Structure validation
Download full validation report
