1QMN

Alpha1-antichymotrypsin serpin in the delta conformation (partial loop insertion)

Summary for 1QMN

• Entry DOI: 10.2210/pdb1qmn/pdb
• Related: 1AS4 2ACH 3CAA 4CAA
• Descriptor: ALPHA-1-ANTICHYMOTRYPSIN (1 entity in total)
• Functional Keywords: serpin, serine proteinase inhibitor, hydrolase inhibitor loop-sheet polymerization, emphysema, disease mutation, acute phase protein, conformational disease, hydrolase inhibitor
• Biological source: HOMO SAPIENS (HUMAN)
• Total number of polymer chains: 1
• Total formula weight: 45353.69

Authors

Gooptu, B.,Hazes, B.,Lomas, D.A. (deposition date: 1999-10-04, release date: 2000-01-17, Last modification date: 2023-12-13)

Primary citation

Gooptu, B.,Hazes, B.,Chang, W.-S.W.,Dafforn, T.R.,Carrell, R.W.,Read, R.J.,Lomas, D.A.
Inactive Conformation of the Serpin Alpha1-Antichymotrypsin Indicates Two-Stage Insertion of the Reactive Loop: Implications for Inhibitory Function and Conformational Disease
Proc.Natl.Acad.Sci.USA, 97:67-, 2000

PubMed Abstract: The serpins are a family of proteinase inhibitors that play a central role in the control of proteolytic cascades. Their inhibitory mechanism depends on the intramolecular insertion of the reactive loop into beta-sheet A after cleavage by the target proteinase. Point mutations within the protein can allow aberrant conformational transitions characterized by beta-strand exchange between the reactive loop of one molecule and beta-sheet A of another. These loop-sheet polymers result in diseases as varied as cirrhosis, emphysema, angio-oedema, and thrombosis, and we recently have shown that they underlie an early-onset dementia. We report here the biochemical characteristics and crystal structure of a naturally occurring variant (Leu-55-Pro) of the plasma serpin alpha(1)-antichymotrypsin trapped as an inactive intermediate. The structure demonstrates a serpin configuration with partial insertion of the reactive loop into beta-sheet A. The lower part of the sheet is filled by the last turn of F-helix and the loop that links it to s3A. This conformation matches that of proposed intermediates on the pathway to complex and polymer formation in the serpins. In particular, this intermediate, along with the latent and polymerized conformations, explains the loss of activity of plasma alpha(1)-antichymotrypsin associated with chronic obstructive pulmonary disease in patients with the Leu-55-Pro mutation.

PubMed: 10618372
DOI: 10.1073/PNAS.97.1.67

Experimental method

X-RAY DIFFRACTION (2.27 Å)