Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA

Summary for 1PM5

Related1KFV 1NNJ
DescriptorDNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), Formamidopyrimidine-DNA glycosylase, ... (6 entities in total)
Functional Keywordsdna repair, fpg, mutm, abasic site, hydrolase-dna complex, hydrolase/dna
Biological sourceLactococcus lactis subsp. cremoris
Total number of polymer chains3
Total molecular weight39868.41
Pereira de Jesus-Tran, K.,Serre, L.,Zelwer, C.,Castaing, B. (deposition date: 2003-06-10, release date: 2004-07-27, Last modification date: 2011-07-13)
Primary citation
Pereira de Jesus, K.,Serre, L.,Zelwer, C.,Castaing, B.
Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA.
Nucleic Acids Res., 33:5936-5944, 2005
PubMed: 16243784 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gki879
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.21971.1%0.9%3.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution