1JQ3

Crystal Structure of Spermidine Synthase in Complex with Transition State Analogue AdoDATO

1JQ3 の概要

• エントリーDOI: 10.2210/pdb1jq3/pdb
• 関連するPDBエントリー: 1INL
• 分子名称: Spermidine synthase, S-ADENOSYL-1,8-DIAMINO-3-THIOOCTANE (3 entities in total)
• 機能のキーワード: aminopropyltransferase, homo-tetramer, thermophyle, transition-state analogue, beta-barrel, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg, transferase
• 由来する生物種: Thermotoga maritima
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 138006.75

構造登録者

Korolev, S.,Ikeguchi, Y.,Skarina, T.,Beasley, S.,Edwards, A.,Joachimiak, A.,Pegg, A.E.,Savchenko, A.,Midwest Center for Structural Genomics (MCSG) (登録日: 2001-08-03, 公開日: 2001-11-21, 最終更新日: 2023-08-16)

主引用文献

Korolev, S.,Ikeguchi, Y.,Skarina, T.,Beasley, S.,Arrowsmith, C.,Edwards, A.,Joachimiak, A.,Pegg, A.E.,Savchenko, A.
The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor.
Nat.Struct.Biol., 9:27-31, 2002

PubMed Abstract: Polyamines are essential in all branches of life. Spermidine synthase (putrescine aminopropyltransferase, PAPT) catalyzes the biosynthesis of spermidine, a ubiquitous polyamine. The crystal structure of the PAPT from Thermotoga maritima (TmPAPT) has been solved to 1.5 A resolution in the presence and absence of AdoDATO (S-adenosyl-1,8-diamino-3-thiooctane), a compound containing both substrate and product moieties. This, the first structure of an aminopropyltransferase, reveals deep cavities for binding substrate and cofactor, and a loop that envelops the active site. The AdoDATO binding site is lined with residues conserved in PAPT enzymes from bacteria to humans, suggesting a universal catalytic mechanism. Other conserved residues act sterically to provide a structural basis for polyamine specificity. The enzyme is tetrameric; each monomer consists of a C-terminal domain with a Rossmann-like fold and an N-terminal beta-stranded domain. The tetramer is assembled using a novel barrel-type oligomerization motif.

PubMed: 11731804
DOI: 10.1038/nsb737

実験手法

X-RAY DIFFRACTION (1.8 Å)