1I02

NMR STRUCTURE OF CTX A3 AT NEUTRAL PH (20 STRUCTURES)

Summary for 1I02

• Entry DOI: 10.2210/pdb1i02/pdb
• Related: 1CB9 1CDT 1KXI 1TGX 2CDX 2CRT
• NMR Information: BMRB: 4966
• Descriptor: CARDIOTOXIN-3 (1 entity in total)
• Functional Keywords: cardiotoxin, ctx, cytotoxin, hemolysis, membrane binding protein, gag binding protein, bound water, three-finger type, toxin
• Biological source: Naja atra (Chinese cobra)
• Total number of polymer chains: 1
• Total formula weight: 6758.33

Authors

Sue, S.-C.,Harold, J.,Wu, W.-g. (deposition date: 2001-01-28, release date: 2001-02-14, Last modification date: 2024-10-23)

Primary citation

Sue, S.C.,Jarrell, H.C.,Brisson, J.R.,Wu, W.G.
Dynamic characterization of the water binding loop in the P-type cardiotoxin: implication for the role of the bound water molecule.
Biochemistry, 40:12782-12794, 2001

PubMed Abstract: Recent studies of cobra P-type cardiotoxins (CTXs) have shown that the water-binding loop (loop II) plays a crucial role in toxin binding to biological membranes and in their cytotoxicity. To understand the role of bound water in the loop, the structure and dynamics of the major P-type CTX from Taiwan cobra, CTX A3, were determined by a comprehensive NMR analysis involving (1)H NOESY/ROESY, (13)C[1)H]NOE/T(1) relaxation, and (17)O triple-quantum filtered NMR. A single water molecule was found to be tightly hydrogen bonded to the NH of Met26 with a correlation time (5-7 ns) approaching the isotropic tumbling time (3.8-4.5 ns) of the CTX A3 molecule. Surprisingly, despite the relatively long residence time (ca. 5 ns to 100 micros), the bound water molecule of CTX A3 is located within a dynamic (order parameter S(2) approximately 0.7) and solvent accessible loop. Comparison among several P-type CTXs suggests that proline residues in the consensus sequence of MxAxPxVPV should play an important role in the formation of the water binding loop. It is proposed that the exchange rate of the bound water may play a role in regulating the lipid binding mode of amphiphilic CTX molecules near membrane surfaces.

PubMed: 11669614
DOI: 10.1021/bi010848f

Experimental method

SOLUTION NMR