1DP7

COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE

Summary for 1DP7

DescriptorDNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU)P*GP*GP*TP*AP*AP*CP*G)-3'), MHC CLASS II TRANSCRIPTION FACTOR HRFX1, 1,2-ETHANEDIOL, ... (5 entities in total)
Functional Keywordswinged helix, mhc class ii transcription factor, protein-dna cocrystal structure, novel mode of dna recognition, transcription-dna complex, transcription/dna
Cellular locationNucleus P22670
Total number of polymer chains2
Total molecular weight14087.27
Authors
Gajiwala, K.S.,Chen, H.,Cornille, F.,Roques, B.P.,Reith, W.,Mach, B.,Burley, S.K. (deposition date: 1999-12-23, release date: 2000-03-06, Last modification date: 2011-07-13)
Primary citation
Gajiwala, K.S.,Chen, H.,Cornille, F.,Roques, B.P.,Reith, W.,Mach, B.,Burley, S.K.
Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding.
Nature, 403:916-921, 2000
PubMed: 10706293 (PDB entries with the same primary citation)
DOI: 10.1038/35002634
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.5 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRSRZ outliers203.0%3.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1dp7
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Molmil generated image of 1dp7
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Molmil generated image of 1dp7
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More Biological unit images

Molmil generated image of 1dp7
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Molmil generated image of 1dp7
rotated about x axis by 90°
Molmil generated image of 1dp7
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1dp7.pdb1.gz [45.8 KB])
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