1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

Summary for 1D3E

DescriptorPROTEIN (INTERCELLULAR ADHESION MOLECULE-1), PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1), PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2), ... (5 entities in total)
Functional Keywordshuman rhinovirus, hrv16, icam-1, fitting of x-ray structures into cryo-em reconstructions, common cold, virus uncoating, virus/ viral protein, rhinovirus-receptor complex, icosahedral virus, virus-receptor complex, virus/receptor
Biological sourceHomo sapiens (human)
More
Cellular locationProtein VP2: Virion. Protein VP3: Virion. Protein VP1: Virion. Protein 2B: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Protein 2C: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Protein 3A: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Protein 3B: Virion (Potential). Picornain 3C: Host cytoplasm (Potential). RNA-directed RNA polymerase 3D-POL: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side (Potential) Q82122 Q82122 Q82122 Q82122
Total number of polymer chains5
Total molecular weight114351.14
Authors
Bella, J.,Rossmann, M.G. (deposition date: 1999-09-29, release date: 2000-01-19, Last modification date: 2011-07-13)
Primary citation
Kolatkar, P.R.,Bella, J.,Olson, N.H.,Bator, C.M.,Baker, T.S.,Rossmann, M.G.
Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18:6249-6259, 1999
PubMed: 10562537 (PDB entries with the same primary citation)
DOI: 10.1093/emboj/18.22.6249
MImport into Mendeley
Experimental method
ELECTRON MICROSCOPY (28 Å)
?

Structure validation

Clashscore4MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures

More Asymmetric unit images

Molmil generated image of 1d3e
no rotation
Molmil generated image of 1d3e
rotated about x axis by 90°
Molmil generated image of 1d3e
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 1d3e
no rotation
Molmil generated image of 1d3e
rotated about x axis by 90°
Molmil generated image of 1d3e
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1d3e.pdb1.gz [1.06 MB])