1D0V

CRYSTAL STRUCTURE OF NICOTINATE MONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE (COBT) FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH ITS REACTION PRODUCTS DETERMINED TO 1.9 A RESOLUTION

Summary for 1D0V

Related1D0S
DescriptorNICOTINATE MONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE, ALPHA-RIBAZOLE-5'-PHOSPHATE, NICOTINIC ACID, ... (4 entities in total)
Functional Keywordsdinucleotide-binding motif, phosphoribosyltransferase, transferase
Biological sourceSalmonella typhimurium
Total number of polymer chains1
Total molecular weight37126.96
Authors
Cheong, C.-G.,Escalante-Semerena, J.C.,Rayment, I. (deposition date: 1999-09-14, release date: 1999-12-29, Last modification date: 2018-01-31)
Primary citation
Cheong, C.G.,Escalante-Semerena, J.C.,Rayment, I.
The three-dimensional structures of nicotinate mononucleotide:5,6- dimethylbenzimidazole phosphoribosyltransferase (CobT) from Salmonella typhimurium complexed with 5,6-dimethybenzimidazole and its reaction products determined to 1.9 A resolution.
Biochemistry, 38:16125-16135, 1999
PubMed: 10587435 (PDB entries with the same primary citation)
DOI: 10.1021/bi991752c
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.9 Å)
?

Structure validation

ClashscoreRamachandran outliersSidechain outliersRSRZ outliers160.6%10.8%4.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1d0v
no rotation
Molmil generated image of 1d0v
rotated about x axis by 90°
Molmil generated image of 1d0v
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 1d0v
no rotation
Molmil generated image of 1d0v
rotated about x axis by 90°
Molmil generated image of 1d0v
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1d0v.pdb1.gz [106.06 KB])
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan