1AMK

LEISHMANIA MEXICANA TRIOSE PHOSPHATE ISOMERASE

Summary for 1AMK

• Entry DOI: 10.2210/pdb1amk/pdb
• Descriptor: TRIOSE PHOSPHATE ISOMERASE, 2-PHOSPHOGLYCOLIC ACID (3 entities in total)
• Functional Keywords: tim, 2-pg, pga, gluconeogenesis, fatty acid biosynthesis
• Biological source: Leishmania mexicana
• Cellular location: Cytoplasm: P48499
• Total number of polymer chains: 1
• Total formula weight: 27365.25

Authors

Williams, J.C.,Wierenga, R. (deposition date: 1997-06-17, release date: 1997-12-17, Last modification date: 2024-05-22)

Primary citation

Williams, J.C.,Zeelen, J.P.,Neubauer, G.,Vriend, G.,Backmann, J.,Michels, P.A.,Lambeir, A.M.,Wierenga, R.K.
Structural and mutagenesis studies of leishmania triosephosphate isomerase: a point mutation can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power.
Protein Eng., 12:243-250, 1999

PubMed Abstract: The dimeric enzyme triosephosphate isomerase (TIM) has a very tight and rigid dimer interface. At this interface a critical hydrogen bond is formed between the main chain oxygen atom of the catalytic residue Lys13 and the completely buried side chain of Gln65 (of the same subunit). The sequence of Leishmania mexicana TIM, closely related to Trypanosoma brucei TIM (68% sequence identity), shows that this highly conserved glutamine has been replaced by a glutamate. Therefore, the 1.8 A crystal structure of leishmania TIM (at pH 5.9) was determined. The comparison with the structure of trypanosomal TIM shows no rearrangements in the vicinity of Glu65, suggesting that its side chain is protonated and is hydrogen bonded to the main chain oxygen of Lys13. Ionization of this glutamic acid side chain causes a pH-dependent decrease in the thermal stability of leishmania TIM. The presence of this glutamate, also in its protonated state, disrupts to some extent the conserved hydrogen bond network, as seen in all other TIMs. Restoration of the hydrogen bonding network by its mutation to glutamine in the E65Q variant of leishmania TIM results in much higher stability; for example, at pH 7, the apparent melting temperature increases by 26 degrees C (57 degrees C for leishmania TIM to 83 degrees C for the E65Q variant). This mutation does not affect the kinetic properties, showing that even point mutations can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power at the mesophilic temperature.

PubMed: 10235625
DOI: 10.1093/protein/12.3.243

Experimental method

X-RAY DIFFRACTION (1.83 Å)