1BCJ

MANNOSE-BINDING PROTEIN-A MUTANT (QPDWGHV) COMPLEXED WITH N-ACETYL-D-GALACTOSAMINE

Summary for 1BCJ

• Entry DOI: 10.2210/pdb1bcj/pdb
• Descriptor: MANNOSE-BINDING PROTEIN-A, 2-acetamido-2-deoxy-beta-D-galactopyranose, CALCIUM ION, ... (5 entities in total)
• Functional Keywords: lectin, c-type lectin, calcium-binding protein
• Biological source: Rattus norvegicus (Norway rat)
• Total number of polymer chains: 3
• Total formula weight: 52318.40

Authors

Kolatkar, A.R.,Weis, W.I. (deposition date: 1998-04-30, release date: 1998-06-17, Last modification date: 2024-10-30)

Primary citation

Kolatkar, A.R.,Leung, A.K.,Isecke, R.,Brossmer, R.,Drickamer, K.,Weis, W.I.
Mechanism of N-acetylgalactosamine binding to a C-type animal lectin carbohydrate-recognition domain.
J.Biol.Chem., 273:19502-19508, 1998

PubMed Abstract: The mammalian hepatic asialoglycoprotein receptor, a member of the C-type animal lectin family, displays preferential binding to N-acetylgalactosamine compared with galactose. The structural basis for selective binding to N-acetylgalactosamine has been investigated. Regions of the carbohydrate-recognition domain of the receptor believed to be important in preferential binding to N-acetylgalactosamine have been inserted into the homologous carbohydrate-recognition domain of a mannose-binding protein mutant that was previously altered to bind galactose. Introduction of a single histidine residue corresponding to residue 256 of the hepatic asialoglycoprotein receptor was found to cause a 14-fold increase in the relative affinity for N-acetylgalactosamine compared with galactose. The relative ability of various acyl derivatives of galactosamine to compete for binding to this modified carbohydrate-recognition domain suggest that it is a good model for the natural N-acetylgalactosamine binding site of the asialoglycoprotein receptor. Crystallographic analysis of this mutant carbohydrate-recognition domain in complex with N-acetylgalactosamine reveals a direct interaction between the inserted histidine residue and the methyl group of the N-acetyl substituent of the sugar. Evidence for the role of the side chain at position 208 of the receptor in positioning this key histidine residue was obtained from structural analysis and mutagenesis experiments. The corresponding serine residue in the modified carbohydrate-recognition domain of mannose-binding protein forms a hydrogen bond to the imidazole side chain. When this serine residue is changed to valine, loss in selectivity for N-acetylgalactosamine is observed. The structure of this mutant reveals that the beta-branched valine side chain interacts directly with the histidine side chain, resulting in an altered imidazole ring orientation.

PubMed: 9677372
DOI: 10.1074/jbc.273.31.19502

Experimental method

X-RAY DIFFRACTION (2.1 Å)