9Z69
RT XFEL structure of the one-flash state of Photosystem II (1F, S2 rich) at 1.98 Angstrom obtained from conventional data at 9.5 keV
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, U (A, a) | Photosystem II protein D1 1 | polymer | 344 | 38265.6 | 2 | UniProt (P0A444) | Thermosynechococcus vestitus BP-1 | PSII D1 protein 1,Photosystem II Q(B) protein 1 |
| 2 | B, V (B, b) | Photosystem II CP47 reaction center protein | polymer | 510 | 56656.5 | 2 | UniProt (Q8DIQ1) | Thermosynechococcus vestitus BP-1 | PSII 47 kDa protein,Protein CP-47 |
| 3 | C, W (C, c) | Photosystem II CP43 reaction center protein | polymer | 461 | 50287.5 | 2 | UniProt (Q8DIF8) | Thermosynechococcus vestitus BP-1 | PSII 43 kDa protein,Protein CP-43 |
| 4 | D, X (D, d) | Photosystem II D2 protein | polymer | 352 | 39388.2 | 2 | UniProt (Q8CM25) | Thermosynechococcus vestitus BP-1 | PSII D2 protein,Photosystem II Q(A) protein |
| 5 | E, Y (E, e) | Cytochrome b559 subunit alpha | polymer | 84 | 9580.8 | 2 | UniProt (Q8DIP0) | Thermosynechococcus vestitus BP-1 | PSII reaction center subunit V |
| 6 | F, Z (F, f) | Cytochrome b559 subunit beta | polymer | 45 | 5067.9 | 2 | UniProt (Q8DIN9) | Thermosynechococcus vestitus BP-1 | PSII reaction center subunit VI |
| 7 | AA, G (H, h) | Photosystem II reaction center protein H | polymer | 66 | 7314.7 | 2 | UniProt (Q8DJ43) | Thermosynechococcus vestitus BP-1 | PSII-H |
| 8 | BA, H (I, i) | Photosystem II reaction center protein I | polymer | 38 | 4438.3 | 2 | UniProt (Q8DJZ6) | Thermosynechococcus vestitus BP-1 | PSII-I,PSII 4.4 kDa protein |
| 9 | CA, I (J, j) | Photosystem II reaction center protein J | polymer | 40 | 4105.9 | 2 | UniProt (P59087) | Thermosynechococcus vestitus BP-1 | PSII-J |
| 10 | DA, J (K, k) | Photosystem II reaction center protein K | polymer | 46 | 5028.1 | 2 | UniProt (Q9F1K9) | Thermosynechococcus vestitus BP-1 | PSII-K |
| 11 | EA, K (L, l) | Photosystem II reaction center protein L | polymer | 37 | 4299.0 | 2 | UniProt (Q8DIN8) | Thermosynechococcus vestitus BP-1 | PSII-L |
| 12 | FA, L (M, m) | Photosystem II reaction center protein M | polymer | 36 | 4009.7 | 2 | UniProt (Q8DHA7) | Thermosynechococcus vestitus BP-1 | PSII-M |
| 13 | GA, M (O, o) | Photosystem II manganese-stabilizing polypeptide | polymer | 272 | 29637.4 | 2 | UniProt (P0A431) | Thermosynechococcus vestitus BP-1 | MSP |
| 14 | HA, N (T, t) | Photosystem II reaction center protein T | polymer | 32 | 3906.7 | 2 | UniProt (Q8DIQ0) | Thermosynechococcus vestitus BP-1 | PSII-T,PSII-Tc |
| 15 | IA, O (U, u) | Photosystem II 12 kDa extrinsic protein | polymer | 134 | 15031.0 | 2 | UniProt (Q9F1L5) | Thermosynechococcus vestitus BP-1 | PS II complex 12 kDa extrinsic protein,PSII-U |
| 16 | JA, P (V, v) | Cytochrome c-550 | polymer | 163 | 18046.9 | 2 | UniProt (P0A386) | Thermosynechococcus vestitus BP-1 | Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c |
| 17 | KA, Q (Y, y) | Photosystem II reaction center protein Ycf12 | polymer | 46 | 5039.1 | 2 | UniProt (Q8DJI1) | Thermosynechococcus vestitus BP-1 | |
| 18 | LA, R (X, x) | Photosystem II reaction center X protein | polymer | 41 | 4322.2 | 2 | UniProt (Q9F1R6) | Thermosynechococcus vestitus BP-1 | |
| 19 | MA, S (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6766.2 | 2 | UniProt (Q8DHJ2) | Thermosynechococcus vestitus BP-1 | PSII-Z |
| 20 | NA, T (R, r) | Photosystem II protein Y | polymer | 41 | 4590.6 | 2 | UniProt (Q8DKM3) | Thermosynechococcus vestitus BP-1 | |
| 21 | OA, SE (A, a) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 22 | PA, TE (A, a) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 23 | QA, RA, UE, VE (A, a) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) PubChem (312) | |||
| 24 | CF, FC, GB, GC, GH... (a, C, B, d, c...) | CHLOROPHYLL A | non-polymer | 893.5 | 70 | Chemie (CLA) | |||
| 25 | FH, ID, UA, YE (d, D, A, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 26 | AF, AG, FE, FI, GE... (a, b, K, k, d...) | BETA-CAROTENE | non-polymer | 536.9 | 22 | Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668) | |||
| 27 | BF, JH, MD, XA (a, d, D, A) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 28 | AC, AE, AI, BE, BI... (B, H, h, i, I...) | STEARIC ACID | non-polymer | 284.5 | 55 | Chemie (STE) PubChem (5281) | |||
| 29 | AB, IE, II, LH, MH... (A, L, l, d, D...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 10 | Chemie (LHG) | |||
| 30 | BB, BC, BG, DF, EF... (A, B, b, a, D...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) PubChem (25147486) | |||
| 31 | AD, AH, BD, BH, CB... (C, c, A, H, h) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 9 | Chemie (DGD) PubChem (15991538) | |||
| 32 | CH, DD, DG, DH, FF... (c, C, b, a, M...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 15 | Chemie (LMG) PubChem (446441) | |||
| 33 | EH, HD (d, D) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 34 | VH, XD (f, F) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 35 | PE, PI (V, v) | HEME C | non-polymer | 620.5 | 2 | Chemie (HEC) | |||
| 36 | AJ, AK, BJ, BK, CJ... (K, x, L, z, M...) | water | water | 18.0 | 1945 | Chemie (HOH) |
Sequence modifications
H, h: 1 - 66 (UniProt: Q8DJ43)
| PDB | External Database | Details |
|---|---|---|
| Cys 41 | Phe 41 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 631565.0 | |
| Non-Polymers* | Number of molecules | 211 |
| Total formula weight | 133954.2 | |
| All* | Total formula weight | 765519.1 |
