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9YZM

Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CTAATTAGGC and loaded with Even-skipped homeodomain

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (31-MER)polymer319472.11Escherichia coli
2B
(B)
DNA (31-MER)polymer319592.21Escherichia coli
3C
(C)
Replication initiation proteinpolymer26330749.11UniProt (P03856)Escherichia coliProtein E,Protein rep,Protein F4, Replication Initiator protein RepE54
4D, E
(D, E)
Segmentation protein even-skippedpolymer647853.02UniProt (P06602)
Pfam (PF00046)
Drosophila melanogaster (fruit fly)
5F, G
(A, C)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
C: 1 - 251 (UniProt: P03856)
PDBExternal DatabaseDetails
Met -11-initiating methionine
Arg -10-expression tag
Gly -9-expression tag
Ser -8-expression tag
His -7-expression tag
His -6-expression tag
His -5-expression tag
His -4-expression tag
His -3-expression tag
His -2-expression tag
Gly -1-expression tag
Ser 0-expression tag
Pro 118Arg 118conflict
D, E: 4 - 64 (UniProt: P06602)
PDBExternal DatabaseDetails
Gly 1-expression tag
Thr 2-expression tag
Gly 3-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight65519.3
Non-Polymers*Number of molecules2
Total formula weight48.6
All*Total formula weight65568.0
*Water molecules are not included.

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PDB entries from 2026-03-11

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