9YWB
Hypomethylated nucleoplasmic pre-60S intermediate containing Nog2 at Rsa4-arrested 5S post-rotation state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (D) | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) | Saccharomyces cerevisiae BY4741 | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 2 | B (J) | 60S ribosomal protein L11-A | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) | Saccharomyces cerevisiae BY4741 | L16,Large ribosomal subunit protein uL5-A,RP39,YL22 |
| 3 | C (A) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) | Saccharomyces cerevisiae BY4741 | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 4 | D (a) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) | Saccharomyces cerevisiae BY4741 | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 5 | E (B) | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 1 | UniProt (P14126) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 6 | F (b) | Nucleolar GTP-binding protein 1 | polymer | 647 | 74531.2 | 1 | UniProt (Q02892) | Saccharomyces cerevisiae BY4741 | |
| 7 | G (C) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (P10664) | Saccharomyces cerevisiae BY4741 | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 8 | H (c) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) | Saccharomyces cerevisiae BY4741 | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 9 | I (d) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) | Saccharomyces cerevisiae BY4741 | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 10 | J (E) | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) | Saccharomyces cerevisiae BY4741 | L17,Large ribosomal subunit protein eL6-A,RP18,YL16 |
| 11 | K (e) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL32 |
| 12 | L (F) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) | Saccharomyces cerevisiae BY4741 | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 13 | M (f) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) | Saccharomyces cerevisiae BY4741 | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 14 | N (G) | Large ribosomal subunit protein eL8A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) | Saccharomyces cerevisiae BY4741 | |
| 15 | O (g) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL34-A |
| 16 | P (I) | Bud site selection protein 20 | polymer | 166 | 18547.0 | 1 | UniProt (Q08004) | Saccharomyces cerevisiae BY4741 | |
| 17 | Q (H) | Large ribosomal subunit protein uL6A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) | Saccharomyces cerevisiae BY4741 | |
| 18 | R (h) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL29-A |
| 19 | S (i) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) | Saccharomyces cerevisiae BY4741 | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 20 | T (j) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) | Saccharomyces cerevisiae BY4741 | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 21 | U (k) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL38 |
| 22 | V (L) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL13-A |
| 23 | W (l) | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) | Saccharomyces cerevisiae BY4741 | L46,Large ribosomal subunit protein eL39,YL40 |
| 24 | X (M) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL14-A |
| 25 | Y (p) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) | Saccharomyces cerevisiae BY4741 | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 26 | Z (N) | Large ribosomal subunit protein eL15A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) | Saccharomyces cerevisiae BY4741 | |
| 27 | AA (u) | Ribosome biogenesis protein RLP24 | polymer | 199 | 24027.7 | 1 | UniProt (Q07915) | Saccharomyces cerevisiae BY4741 | |
| 28 | BA (O) | Large ribosomal subunit protein uL13A | polymer | 199 | 22247.2 | 1 | UniProt (P26784) | Saccharomyces cerevisiae BY4741 | |
| 29 | CA (P) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) | Saccharomyces cerevisiae BY4741 | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 30 | DA (Q) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL18-A,RP28 |
| 31 | EA (R) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) | Saccharomyces cerevisiae BY4741 | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 32 | FA (r) | Ribosome biogenesis protein NSA2 | polymer | 261 | 29786.8 | 1 | UniProt (P40078) | Saccharomyces cerevisiae BY4741 | NOP7-associated protein 2 |
| 33 | GA (S) | Large ribosomal subunit protein eL20A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) | Saccharomyces cerevisiae BY4741 | |
| 34 | HA (T) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL21-A |
| 35 | IA (U) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) | Saccharomyces cerevisiae BY4741 | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 36 | JA (V) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) | Saccharomyces cerevisiae BY4741 | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 37 | KA (W) | Ribosome assembly factor MRT4 | polymer | 236 | 27098.0 | 1 | UniProt (P33201) | Saccharomyces cerevisiae BY4741 | |
| 38 | LA (X) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 39 | MA (Y) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) | Saccharomyces cerevisiae BY4741 | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 40 | NA (y) | Eukaryotic translation initiation factor 6 | polymer | 245 | 26476.6 | 1 | UniProt (Q12522) | Saccharomyces cerevisiae BY4741 | eIF-6 |
| 41 | OA (Z) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL27-A |
| 42 | PA (z) | UPF0642 protein YBL028C | polymer | 106 | 12435.4 | 1 | UniProt (P38202) | Saccharomyces cerevisiae BY4741 | |
| 43 | QA (K) | 60S ribosomal protein L12 | polymer | 165 | 15952.0 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 44 | RA (1) | 25S ribosomal RNA | polymer | 3396 | 1097493.9 | 1 | GenBank (2211412803) | Saccharomyces cerevisiae BY4741 | |
| 45 | SA (3) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1772891209) | Saccharomyces cerevisiae BY4741 | |
| 46 | TA (5) | rRNA-processing protein CGR1 | polymer | 120 | 14460.1 | 1 | UniProt (P53188) | Saccharomyces cerevisiae BY4741 | Coiled-coil growth-regulated protein 1 |
| 47 | UA (x) | Ribosome assembly protein 4 | polymer | 515 | 57106.8 | 1 | UniProt (P25382) | Saccharomyces cerevisiae BY4741 | Notchless protein homolog 1,Ribosome biogenesis factor RSA4 |
| 48 | VA (m) | Nucleolar GTP-binding protein 2 | polymer | 486 | 55585.6 | 1 | UniProt (P53742) | Saccharomyces cerevisiae BY4741 | |
| 49 | WA (2) | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (2295382888) | Saccharomyces cerevisiae BY4741 | |
| 50 | XA (t) | Protein SDA1 | polymer | 767 | 86755.6 | 1 | UniProt (P53313) | Saccharomyces cerevisiae BY4741 | Severe depolymerization of actin protein 1 |
| 51 | YA (n) | Pre-rRNA-processing protein IPI1 | polymer | 334 | 37928.9 | 1 | UniProt (A6ZSZ4) | Saccharomyces cerevisiae BY4741 | Involved in processing IST2 protein 1 |
| 52 | ZA (4) | Probable metalloprotease ARX1 | polymer | 593 | 65290.3 | 1 | UniProt (Q03862) | Saccharomyces cerevisiae BY4741 | Associated with ribosomal export complex protein 1 |
| 53 | AB (o) | Ribosome biogenesis protein ALB1 | polymer | 175 | 19322.0 | 1 | UniProt (A6ZQK9) | Saccharomyces cerevisiae BY4741 | |
| 54 | BB (s) | Large ribosomal subunit protein uL1A | polymer | 217 | 24524.8 | 1 | UniProt (P0CX43) | Saccharomyces cerevisiae BY4741 | |
| 55 | CB (q) | Nuclear GTP-binding protein NUG1 | polymer | 520 | 57798.7 | 1 | UniProt (P40010) | Saccharomyces cerevisiae BY4741 | Nuclear GTPase 1 |
| 56 | DB (Lr) | Small ribosomal subunit protein eS32A | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L41-A,L47,Large ribosomal subunit protein eL41A,YL41 |
| 57 | EB (m) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 58 | FB (m) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 59 | GB (m) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) PubChem (813) | |||
| 60 | HB (m) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 2501766.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 586.6 | |
| All* | Total formula weight | 2502353.3 |
