9YPD
The ligand free HCoV-HKU1 spike structure obtained from data collected on 100 kV Tundra at 180kX magnification with Falcon C detector
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1357 | 150476.6 | 3 | UniProt (E0YJ44) | Human coronavirus HKU1 (HCoV-HKU1) | S glycoprotein,E2,Peplomer protein |
| 2 | AA, D, DA, E, EA... (a, D, d, E, e...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 19 | In PDB GlyTouCan (G42666HT) | |||
| 3 | H, Q, Z (H, Q, Z) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 4 | BA, CA, J, K, S... (b, c, J, K, S...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 5 | AB, BB, CB, DB, EB... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 32 | Chemie (NAG) PubChem (24139) |
Sequence modifications
A, B, C: 12 - 1266 (UniProt: E0YJ44)
| PDB | External Database | Details |
|---|---|---|
| Met -10 | - | initiating methionine |
| Pro -9 | - | expression tag |
| Met -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Ser -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Gln -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Leu -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Thr 0 | - | expression tag |
| Leu 1 | - | expression tag |
| Tyr 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Leu 4 | - | expression tag |
| Gly 5 | - | expression tag |
| Met 6 | - | expression tag |
| Leu 7 | - | expression tag |
| Val 8 | - | expression tag |
| Ala 9 | - | expression tag |
| Ser 10 | - | expression tag |
| Val 11 | - | expression tag |
| Gly 756 | Arg 756 | conflict |
| Gly 757 | Arg 757 | conflict |
| Ser 758 | Lys 758 | conflict |
| Gly 759 | Arg 759 | conflict |
| Ser 760 | Arg 760 | conflict |
| Gly 1267 | - | expression tag |
| Ser 1268 | - | expression tag |
| Gly 1269 | - | expression tag |
| Tyr 1270 | - | expression tag |
| Ile 1271 | - | expression tag |
| Pro 1272 | - | expression tag |
| Glu 1273 | - | expression tag |
| Ala 1274 | - | expression tag |
| Pro 1275 | - | expression tag |
| Arg 1276 | - | expression tag |
| Asp 1277 | - | expression tag |
| Gly 1278 | - | expression tag |
| Gln 1279 | - | expression tag |
| Ala 1280 | - | expression tag |
| Tyr 1281 | - | expression tag |
| Val 1282 | - | expression tag |
| Arg 1283 | - | expression tag |
| Lys 1284 | - | expression tag |
| Asp 1285 | - | expression tag |
| Gly 1286 | - | expression tag |
| Glu 1287 | - | expression tag |
| Trp 1288 | - | expression tag |
| Val 1289 | - | expression tag |
| Leu 1290 | - | expression tag |
| Leu 1291 | - | expression tag |
| Ser 1292 | - | expression tag |
| Thr 1293 | - | expression tag |
| Phe 1294 | - | expression tag |
| Leu 1295 | - | expression tag |
| Gly 1296 | - | expression tag |
| Arg 1297 | - | expression tag |
| Ser 1298 | - | expression tag |
| Leu 1299 | - | expression tag |
| Glu 1300 | - | expression tag |
| Val 1301 | - | expression tag |
| Leu 1302 | - | expression tag |
| Phe 1303 | - | expression tag |
| Gln 1304 | - | expression tag |
| Gly 1305 | - | expression tag |
| Pro 1306 | - | expression tag |
| Gly 1307 | - | expression tag |
| His 1308 | - | expression tag |
| His 1309 | - | expression tag |
| His 1310 | - | expression tag |
| His 1311 | - | expression tag |
| His 1312 | - | expression tag |
| His 1313 | - | expression tag |
| His 1314 | - | expression tag |
| His 1315 | - | expression tag |
| Ser 1316 | - | expression tag |
| Ala 1317 | - | expression tag |
| Trp 1318 | - | expression tag |
| Ser 1319 | - | expression tag |
| His 1320 | - | expression tag |
| Pro 1321 | - | expression tag |
| Gln 1322 | - | expression tag |
| Phe 1323 | - | expression tag |
| Glu 1324 | - | expression tag |
| Lys 1325 | - | expression tag |
| Gly 1326 | - | expression tag |
| Gly 1327 | - | expression tag |
| Gly 1328 | - | expression tag |
| Ser 1329 | - | expression tag |
| Gly 1330 | - | expression tag |
| Gly 1331 | - | expression tag |
| Gly 1332 | - | expression tag |
| Gly 1333 | - | expression tag |
| Ser 1334 | - | expression tag |
| Gly 1335 | - | expression tag |
| Gly 1336 | - | expression tag |
| Ser 1337 | - | expression tag |
| Ala 1338 | - | expression tag |
| Trp 1339 | - | expression tag |
| Ser 1340 | - | expression tag |
| His 1341 | - | expression tag |
| Pro 1342 | - | expression tag |
| Gln 1343 | - | expression tag |
| Phe 1344 | - | expression tag |
| Glu 1345 | - | expression tag |
| Lys 1346 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 451429.7 | |
| Branched | Number of molecules | 28 |
| Total formula weight | 14315.3 | |
| Non-Polymers* | Number of molecules | 32 |
| Total formula weight | 7078.7 | |
| All* | Total formula weight | 472823.7 |
