9YIH
V634-136 UCA Fab in complex with HIV-1 Env del4-3fill SOSIP
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Transmembrane protein gp41 | polymer | 153 | 17134.3 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | TM, Glycoprotein 41, gp41 |
| 2 | D, E, F (E, F, G) | Envelope glycoprotein gp160 | polymer | 475 | 53501.6 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | Env polyprotein |
| 3 | G (H) | V634-136 UCA Fab heavy chain | polymer | 129 | 14302.7 | 1 | Macaca mulatta (Rhesus monkey) | ||
| 4 | H (L) | V634-136 UCA Fab light chain | polymer | 112 | 12283.9 | 1 | Macaca mulatta (Rhesus monkey) | ||
| 5 | I, K, L, M, N... (D, J, K, M, N...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 11 | In PDB GlyTouCan (G42666HT) | |||
| 6 | J, O, T (I, O, T) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 7 | V (V) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 1 | In PDB GlyTouCan (G34499SX) | |||
| 8 | AA, AB, BA, BB, CA... (E, G, F, A, B...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) PubChem (24139) |
Sequence modifications
A, B, C: 512 - 664 (UniProt: Q2N0S6)
E, F, G: 33 - 513 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Ser 519 | Phe 516 | conflict |
| Pro 559 | Ile 556 | conflict |
| Pro 561 | Ala 558 | conflict |
| Asp 568 | Leu 565 | conflict |
| His 570 | Val 567 | conflict |
| His 585 | Arg 582 | conflict |
| Cys 605 | Thr 602 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Glu 106 | Thr 105 | conflict |
| Tyr 134 | Val 133 | conflict |
| - | Asn 136 | deletion |
| - | Ile 137 | deletion |
| - | Thr 138 | deletion |
| - | Asp 139 | deletion |
| Cys 201 | Ile 200 | conflict |
| Asn 230 | Asp 229 | conflict |
| Thr 232 | Lys 231 | conflict |
| Asn 241 | Ser 240 | conflict |
| Ile 271 | Met 270 | conflict |
| Leu 288 | Phe 287 | conflict |
| Val 304 | Arg 303 | conflict |
| Tyr 319 | Ala 316 | conflict |
| Asn 332 | Thr 330 | conflict |
| Asn 344 | Lys 342 | conflict |
| Ser 346 | Val 344 | conflict |
| Gln 363 | Asn 361 | conflict |
| Cys 433 | Ala 430 | conflict |
| Cys 501 | Ala 498 | conflict |
| Arg 509 | Glu 506 | conflict |
| Arg 510 | Lys 507 | conflict |
| Arg 512 | Ala 509 | conflict |
| Arg 513 | Val 510 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 238494.3 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 7825.3 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 7299.9 | |
| All* | Total formula weight | 253619.4 |
