9YHS
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E (H, J, M) | AM12-340 Fab heavy chain | polymer | 129 | 14322.0 | 3 | Macaca mulatta (Rhesus monkey) | ||
| 2 | B, D, F (L, K, N) | AM12-340 Fab light chain | polymer | 112 | 12233.6 | 3 | Human immunodeficiency virus 1 (HIV-1) | ||
| 3 | G, H, K (B, C, A) | BG505 MD39 SOSIP gp41 | polymer | 153 | 17134.3 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | Transmembrane protein gp41 |
| 4 | I, J, L (F, G, E) | Envelope glycoprotein gp120 | polymer | 479 | 53927.0 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | Env polyprotein |
| 5 | IA, M, X (i, D, X) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 6 | BA, CA, FA, GA, HA... (b, c, f, g, h...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
| 7 | AA, LA, P (a, l, P) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 8 | DA, OA, S (d, o, S) | alpha-D-mannopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB | |||
| 9 | EA, PA, T (e, p, T) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 3 | In PDB GlyTouCan (G42984ZU) | |||
| 10 | AB, AC, BB, BC, CB... (C, E, F, G, A...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 36 | Chemie (NAG) PubChem (24139) |
Sequence modifications
B, C, A: 512 - 664 (UniProt: Q2N0S6)
F, G, E: 33 - 513 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Ser 519 | Phe 516 | conflict |
| Pro 559 | Ile 556 | conflict |
| Pro 561 | Ala 558 | conflict |
| Asp 568 | Leu 565 | conflict |
| His 570 | Val 567 | conflict |
| His 585 | Arg 582 | conflict |
| Cys 605 | Thr 602 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Glu 106 | Thr 105 | conflict |
| Tyr 134 | Val 133 | conflict |
| Pro 136 | Asn 135 | conflict |
| Leu 138 | Ile 137 | conflict |
| Asn 140 | Asp 139 | conflict |
| Cys 201 | Ile 200 | conflict |
| Asn 230 | Asp 229 | conflict |
| Thr 232 | Lys 231 | conflict |
| Asn 241 | Ser 240 | conflict |
| Ile 271 | Met 270 | conflict |
| Leu 288 | Phe 287 | conflict |
| Val 304 | Arg 303 | conflict |
| Tyr 319 | Ala 316 | conflict |
| Asn 332 | Thr 330 | conflict |
| Asn 344 | Lys 342 | conflict |
| Ser 346 | Val 344 | conflict |
| Gln 363 | Asn 361 | conflict |
| Cys 433 | Ala 430 | conflict |
| Cys 501 | Ala 498 | conflict |
| Arg 509 | Glu 506 | conflict |
| Arg 510 | Lys 507 | conflict |
| Arg 512 | Ala 509 | conflict |
| Arg 513 | Val 510 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 292851.1 | |
| Branched | Number of molecules | 33 |
| Total formula weight | 19355.9 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 7963.5 | |
| All* | Total formula weight | 320170.5 |
