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9YD8

Crystal structure of Phospholipase D (PLD) from Arcanobacterium haemolyticum

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Phospholipase Dpolymer29633710.42UniProt (Q59121)Arcanobacterium haemolyticumPLD,PLD-A,Choline phosphatase,Sphingomyelinase D,SMaseD
2C, E
(A, B)
GLYCEROLnon-polymer92.12Chemie (GOL)
PubChem (753)
3D, F
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
PubChem (888)
4G, H
(A, B)
waterwater18.019Chemie (HOH)
Sequence modifications
A, B: 31 - 309 (UniProt: Q59121)
PDBExternal DatabaseDetails
Met 14-initiating methionine
Gly 15-expression tag
Ser 16-expression tag
Ser 17-expression tag
His 18-expression tag
His 19-expression tag
His 20-expression tag
His 21-expression tag
His 22-expression tag
His 23-expression tag
Glu 24-expression tag
Asn 25-expression tag
Leu 26-expression tag
Tyr 27-expression tag
Phe 28-expression tag
Gln 29-expression tag
Gly 30-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight67420.8
Non-Polymers*Number of molecules4
Total formula weight232.8
All*Total formula weight67653.6
*Water molecules are not included.

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PDB entries from 2026-08-26

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