9YD5
RNA polymerase II on Super pause sequence in the pre-translocated state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA-directed RNA polymerase subunit | polymer | 1474 | 166719.9 | 1 | UniProt (A0A8D1DPV6) | Sus scrofa (pig) | |
| 2 | B (B) | DNA-directed RNA polymerase subunit beta | polymer | 1158 | 132090.5 | 1 | UniProt (I3LGP4) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) | Sus scrofa (pig) | |
| 3 | C (C) | DNA-directed RNA polymerase II subunit RPB3 | polymer | 265 | 30323.8 | 1 | UniProt (I3LCH3) Pfam (PF01193) Pfam (PF01000) | Sus scrofa (pig) | DNA-directed RNA polymerase II subunit C |
| 4 | D (D) | DNA-directed RNA polymerase II subunit RPB4 | polymer | 128 | 14981.8 | 1 | UniProt (A0A8D1GCS3) | Sus scrofa (pig) | DNA-directed RNA polymerase II subunit D,DNA-directed RNA polymerase II subunit rpb4 |
| 5 | E (E) | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | polymer | 209 | 24383.0 | 1 | UniProt (I3LSI7) Pfam (PF03871) Pfam (PF01191) | Sus scrofa (pig) | DNA-directed RNA polymerase II subunit E,RPB5 homolog |
| 6 | F (F) | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | polymer | 75 | 8647.2 | 1 | UniProt (A0A8D1KNW4) | Sus scrofa (pig) | DNA-directed RNA polymerase II subunit F,RPB6 homolog |
| 7 | G (G) | DNA-directed RNA polymerase subunit | polymer | 171 | 19227.2 | 1 | UniProt (A0A4X1VKG7) | Sus scrofa (pig) | |
| 8 | H (H) | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 147 | 16812.8 | 1 | UniProt (I3LCB2) Pfam (PF03870) | Sus scrofa (pig) | |
| 9 | I (I) | DNA-directed RNA polymerase II subunit RPB9 | polymer | 125 | 14541.2 | 1 | UniProt (P60899) Pfam (PF02150) Pfam (PF01096) | Sus scrofa (pig) | RNA polymerase II subunit B9,DNA-directed RNA polymerase II subunit I,RNA polymerase II 14.5 kDa subunit,RPB14.5 |
| 10 | J (J) | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | polymer | 64 | 7283.7 | 1 | UniProt (Q32P78) Pfam (PF01194) | Sus scrofa (pig) | RNA polymerases I,II,and III subunit ABC5,DNA-directed RNA polymerase III subunit L |
| 11 | K (K) | DNA-directed RNA polymerase II subunit RPB11-a | polymer | 115 | 13068.0 | 1 | UniProt (F1RKE4) Pfam (PF13656) | Sus scrofa (pig) | |
| 12 | L (L) | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | polymer | 44 | 5394.4 | 1 | UniProt (A0A8D0JYF1) | Sus scrofa (pig) | DNA-directed RNA polymerase II subunit K |
| 13 | M (N) | DNA non-template strand | polymer | 36 | 11079.1 | 1 | synthetic construct | ||
| 14 | N (P) | RNA transcript | polymer | 15 | 4801.9 | 1 | synthetic construct | ||
| 15 | O (T) | DNA template strand | polymer | 36 | 11079.1 | 1 | synthetic construct | ||
| 16 | P, Q, S, T, U... (A, B, C, I, J...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) PubChem (32051) | |||
| 17 | R (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) |
Sequence modifications
E: 2 - 210 (UniProt: I3LSI7)
| PDB | External Database | Details |
|---|---|---|
| Gly 32 | Glu 32 | conflict |
| Gly 46 | Asp 46 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 15 |
| Total formula weight | 480433.7 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 547.6 | |
| All* | Total formula weight | 480981.3 |
