9YA0
Cryo-EM structure of pre-conoid ring 2 (PCR P2 ring)from Toxoplasma gondii
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, E, H, I... (AA, AD, AE, AH, AI...) | PCR5, TGME49_242320 | polymer | 1073 | 119326.8 | 6 | UniProt (A0A125YZK2) Pfam (PF00643) | Toxoplasma gondii | B-box zinc finger domain-containing protein |
| 2 | B, C, F, G, J... (AB, AC, AF, AG, AJ...) | PCR4, TGME49_201220 | polymer | 603 | 68040.5 | 6 | UniProt (A0A7J6K7R7) Pfam (PF00643) | Toxoplasma gondii | Zinc finger protein |
| 3 | M, N, O, P, Q... (BA, BB, BC, CA, CB...) | Formin 1 | polymer | 5051 | 552604.5 | 12 | UniProt (D0V3Y0) | Toxoplasma gondii | FRM1, TGME49_206430 |
| 4 | AA, BA, CA, DA, Y... (DA, DB, DC, DD, DE...) | PCR11, TGME49_209490 | polymer | 505 | 56836.0 | 6 | UniProt (A0A151HGZ3) | Toxoplasma gondii | |
| 5 | EA, FA, GA (EA, EB, EC) | CGP, TGME49_240380 | polymer | 4956 | 545690.8 | 3 | UniProt (S8F7I2) Pfam (PF12807) | Toxoplasma gondii | Clu domain-containing protein |
| 6 | HA, IA, JA, KA, LA... (FA, FB, FC, FD, FE...) | FLM1, TGME49_271780 | polymer | 2777 | 303103.7 | 6 | UniProt (S8F1N8) Pfam (PF00630) | Toxoplasma gondii | Filamin/ABP280 repeat-containing protein |
| 7 | NA, PA, RA, TA, VA... (GA, GC, GE, GG, GI...) | Transport protein Sec24 | polymer | 1019 | 108131.3 | 6 | UniProt (A0A7J6JV06) Pfam (PF04810) Pfam (PF04811) Pfam (PF08033) Pfam (PF04815) Pfam (PF00626) | Toxoplasma gondii | SEC24, TGME49_277000 |
| 8 | OA, QA, SA, UA, WA... (GB, GD, GF, GH, GJ...) | Protein transport protein SEC23 | polymer | 791 | 87697.2 | 6 | UniProt (A0A125YTJ1) Pfam (PF04810) Pfam (PF04811) Pfam (PF08033) Pfam (PF04815) Pfam (PF00626) | Toxoplasma gondii | SEC23, TGME49_291680 |
| 9 | AB, BB, CB, ZA (HA, HB, HC, HD) | FLM2, TGME49_285990 | polymer | 1192 | 131144.0 | 4 | UniProt (S8GR55) Pfam (PF00630) | Toxoplasma gondii | Filamin/ABP280 repeat-containing protein |
| 10 | DB, EB, FB (IA, IB, IC) | PCR12, TGME49_292170 | polymer | 1599 | 175593.7 | 3 | UniProt (S8F0I2) Pfam (PF13637) Pfam (PF12796) | Toxoplasma gondii | Histone lysine methyltransferase, SET, putative |
| 11 | GB, HB, IB (JA, JB, JC) | PCR10, TGME49_298010 | polymer | 2316 | 261711.6 | 3 | UniProt (S8FEI7) Pfam (PF12807) | Toxoplasma gondii | CLU central domain-containing protein |
| 12 | JB, KB, LB, MB, NB... (KA, KB, KC, KE, KF...) | PCR14, TGME49_311880 | polymer | 728 | 81526.5 | 6 | UniProt (A0A125YI95) | Toxoplasma gondii | GYF domain-containing protein |
| 13 | AC, BC, CC, DC, EC... (LA, LB, LC, LD, LE...) | ICAP16, TGME49_202120 | polymer | 1322 | 147400.1 | 16 | UniProt (S8GEJ5) | Toxoplasma gondii | PH domain-containing protein |
| 14 | FC, GC, HC, IC, JC... (MA, MB, MC, MD, ME...) | PCR12, TGME49_219070 | polymer | 2736 | 310184.1 | 12 | UniProt (S8EN17) Pfam (PF00027) | Toxoplasma gondii | Cyclic nucleotide-binding domain-containing protein |
| 15 | RC, SC, TC, UC (NA, NB, NC, ND) | myosin L, TGME49_291020 | polymer | 2484 | 278088.0 | 4 | UniProt (S8F3J9) Pfam (PF00063) Pfam (PF00415) | Toxoplasma gondii | |
| 16 | VC, WC, XC (OA, OB, OC) | PCR13, TGME49_284620 | polymer | 2333 | 254343.0 | 3 | UniProt (S8FB83) | Toxoplasma gondii | Leucine rich repeat-containing protein |
| 17 | AD, YC, ZC (PA, PB, PC) | PCR15, TGME49_232560 | polymer | 1822 | 200557.8 | 3 | UniProt (S8GK29) | Toxoplasma gondii | |
| 18 | BD, CD, DD, ED (QA, QB, QC, QD) | MLC4, TGME49_294390 | polymer | 172 | 19716.7 | 4 | UniProt (A0A7J6KI07) | Toxoplasma gondii | Putative myosin light chain MLC4 |
| 19 | FD, GD, HD, ID (RA, RB, RC, RD) | Calmodulin | polymer | 179 | 19070.6 | 4 | UniProt (A0A7J6JTN7) Pfam (PF13833) Pfam (PF13202) | Toxoplasma gondii | CAM1, TGME49_246930 |
| 20 | JD, KD, LD, MD (SA, SB, SC, SD) | Calmodulin | polymer | 149 | 16819.6 | 4 | UniProt (A0A7J6JVC7) Pfam (PF13499) | Toxoplasma gondii | CAM4, TGME49_249240 |
Sequence modifications
JA, JB, JC: 1 - 2313 (UniProt: S8FEI7)
MA, MB, MC, MD, ME, MF, MG, MH, MI, MJ, MK, ML: 1 - 2736 (UniProt: S8EN17)
| PDB | External Database | Details |
|---|---|---|
| Val 2314 | - | expression tag |
| Ser 2315 | - | expression tag |
| Ser 2316 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu 999 | - | insertion |
| Lys 1000 | - | insertion |
| Ser 1001 | - | insertion |
| Gly 1002 | - | insertion |
| Thr 1003 | - | insertion |
| Ala 1004 | - | insertion |
| Ala 1005 | - | insertion |
| Ser 1006 | - | insertion |
| His 1007 | - | insertion |
| Ile 1008 | - | insertion |
| Asp 1009 | - | insertion |
| Glu 1010 | - | insertion |
| Glu 1011 | - | insertion |
| Asp 1012 | - | insertion |
| Ser 1013 | - | insertion |
| Arg 1014 | - | insertion |
| Ser 1015 | Ala 999 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 117 |
| Total formula weight | 23832884.4 | |
| All* | Total formula weight | 23832884.4 |
