9Y79
Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (C3SSG2) | Escherichia coli | |
| 2 | B (1) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) | Escherichia coli | Large ribosomal subunit protein uL22 |
| 3 | C (2) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (C3SQV2) | Escherichia coli | |
| 4 | D (3) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (C3SQZ7) | Escherichia coli | |
| 5 | E (4) | Large ribosomal subunit protein bL25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) | Escherichia coli | |
| 6 | F (5) | NT DNA | polymer | 50 | 15464.9 | 1 | synthetic construct | ||
| 7 | G (6) | T DNA | polymer | 50 | 15340.9 | 1 | synthetic construct | ||
| 8 | H (7) | mRNA with 39 nt long spacer | polymer | 56 | 17658.0 | 1 | synthetic construct | ||
| 9 | I (9) | 50S ribosomal protein L10 | polymer | 165 | 17736.6 | 1 | UniProt (P0A7J3) | Escherichia coli | 50S ribosomal protein L8,Large ribosomal subunit protein uL10 |
| 10 | J, Q (A, B) | E-site and P-site tRNA (fMet) | polymer | 76 | 24496.6 | 2 | GenBank (1870104878) | synthetic construct | |
| 11 | K (AA) | DNA-directed RNA polymerase subunit beta | polymer | 1342 | 150820.9 | 1 | UniProt (P0A8V2) | Escherichia coli | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 12 | L, M (AC, AD) | DNA-directed RNA polymerase subunit alpha | polymer | 329 | 36558.7 | 2 | UniProt (P0A7Z4) | Escherichia coli | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 13 | N (AE) | DNA-directed RNA polymerase subunit beta' | polymer | 1407 | 155366.8 | 1 | UniProt (P0A8T7) | Escherichia coli | RNAP subunit beta', RNA polymerase subunit beta', Transcriptase subunit beta' |
| 14 | O (AF) | DNA-directed RNA polymerase subunit omega | polymer | 91 | 10249.5 | 1 | UniProt (P0A800) | Escherichia coli | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 15 | P (AG) | Transcription termination/antitermination protein NusA | polymer | 495 | 54932.7 | 1 | UniProt (P0AFF8) | Escherichia coli | |
| 16 | R (C) | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) | Escherichia coli | |
| 17 | S (D) | 16S rRNA | polymer | 1542 | 499690.0 | 1 | GenBank (1732209707) | Escherichia coli | |
| 18 | T (E) | Small ribosomal subunit protein bS20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) | Escherichia coli | |
| 19 | U (F) | Small ribosomal subunit protein bS21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) | Escherichia coli | |
| 20 | V (G) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) | Escherichia coli | |
| 21 | W (H) | Small ribosomal subunit protein bS1 | polymer | 557 | 61238.9 | 1 | UniProt (P0AG69) | Escherichia coli | 30S ribosomal protein S1 |
| 22 | X (I) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (P0A7V3) | Escherichia coli | |
| 23 | Y (J) | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) | Escherichia coli | |
| 24 | Z (K) | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) | Escherichia coli | |
| 25 | AA (L) | Small ribosomal subunit protein bS6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) | Escherichia coli | |
| 26 | BA (M) | Small ribosomal subunit protein uS7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) | Escherichia coli | |
| 27 | CA (N) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (C3SR12) | Escherichia coli | |
| 28 | DA (NG) | Transcription termination/antitermination protein NusG | polymer | 181 | 20560.5 | 1 | UniProt (P0AFG1) | Escherichia coli | |
| 29 | EA (O) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) | Escherichia coli | |
| 30 | FA (P) | Small ribosomal subunit protein uS10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) | Escherichia coli | |
| 31 | GA (Q) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) | Escherichia coli | |
| 32 | HA (R) | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (P0A7S3) | Escherichia coli | |
| 33 | IA (S) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (A0A2X1PQW4) | Escherichia coli | |
| 34 | JA (T) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) | Escherichia coli | |
| 35 | KA (U) | Small ribosomal subunit protein bS16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) | Escherichia coli | |
| 36 | LA (V) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) | Escherichia coli | |
| 37 | MA (W) | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 1 | UniProt (C3SQW2) | Escherichia coli | |
| 38 | NA (X) | Small ribosomal subunit protein uS13 | polymer | 118 | 13128.5 | 1 | UniProt (A0A7U9IV78) | Escherichia coli | |
| 39 | OA (Y) | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) | Escherichia coli | Large ribosomal subunit protein uL11 |
| 40 | PA (Z) | Large ribosomal subunit protein bL12 | polymer | 121 | 12309.2 | 1 | UniProt (C3SIB2) | Escherichia coli | |
| 41 | QA (a) | 23S rRNA | polymer | 2904 | 941635.4 | 1 | GenBank (937521852) | Escherichia coli | |
| 42 | RA (b) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) | Escherichia coli | Large ribosomal subunit protein bL27 |
| 43 | SA (c) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (A0A1X3JA73) | Escherichia coli | |
| 44 | TA (d) | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (1273279017) | Escherichia coli | |
| 45 | UA (e) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (C3SQY2) | Escherichia coli | |
| 46 | VA (f) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) | Escherichia coli | |
| 47 | WA (g) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) | Escherichia coli | Large ribosomal subunit protein bL31-A |
| 48 | XA (h) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 49 | YA (i) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (C3TE02) | Escherichia coli | |
| 50 | ZA (j) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) | Escherichia coli | Large ribosomal subunit protein uL3 |
| 51 | AB (k) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (C3SME7) | Escherichia coli | |
| 52 | BB (l) | Large ribosomal subunit protein uL4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) | Escherichia coli | 50S ribosomal protein L4 |
| 53 | CB (m) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) | Escherichia coli | |
| 54 | DB (n) | Large ribosomal subunit protein uL5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) | Escherichia coli | 50S ribosomal protein L5 |
| 55 | EB (o) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 56 | FB (p) | Large ribosomal subunit protein uL6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) | Escherichia coli | 50S ribosomal protein L6 |
| 57 | GB (q) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) | Escherichia coli | |
| 58 | HB (r) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) | Escherichia coli | 50S ribosomal protein L9 |
| 59 | IB (s) | Large ribosomal subunit protein uL13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) | Escherichia coli | 50S ribosomal protein L13 |
| 60 | JB (t) | Large ribosomal subunit protein uL14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) | Escherichia coli | 50S ribosomal protein L14 |
| 61 | KB (u) | Large ribosomal subunit protein uL15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) | Escherichia coli | 50S ribosomal protein L15 |
| 62 | LB (v) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 63 | MB (w) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) | Escherichia coli | 50S ribosomal protein L17 |
| 64 | NB (x) | Large ribosomal subunit protein uL18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) | Escherichia coli | 50S ribosomal protein L18 |
| 65 | OB (y) | Large ribosomal subunit protein bL19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K8) | Escherichia coli | |
| 66 | PB (z) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) | Escherichia coli | |
| 67 | QB (AE) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 68 | RB, SB (AE) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) |
Sequence modifications
a: 1 - 2904 (GenBank: 937521852)
| PDB | External Database | Details |
|---|---|---|
| A 887 | U 472128 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 68 |
| Total formula weight | 2808764.6 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 155.1 | |
| All* | Total formula weight | 2808919.7 |
