9Y44
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A5) | LSU alpha rRNA | polymer | 1717 | 556386.3 | 1 | Heterocephalus glaber | ||
| 2 | B (A7) | 5S ribosomal RNA | polymer | 120 | 38652.9 | 1 | GenBank (2261261469) | Heterocephalus glaber (naked mole-rat) | |
| 3 | C (A8) | 5.8S ribosomal RNA | polymer | 156 | 50144.6 | 1 | Heterocephalus glaber | ||
| 4 | D (B2) | 18S ribosomal RNA | polymer | 1804 | 581903.7 | 1 | Heterocephalus glaber | ||
| 5 | E (A6) | LSU beta rRNA | polymer | 2092 | 677416.0 | 1 | Heterocephalus glaber | ||
| 6 | F (A) | Large ribosomal subunit protein uL2 | polymer | 248 | 26886.6 | 1 | UniProt (A0A0P6J3A4) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L8 |
| 7 | G (n) | 60S ribosomal protein L41 | polymer | 25 | 3473.5 | 1 | UniProt (A0A0P6J950) | Heterocephalus glaber (naked mole-rat) | |
| 8 | H (B) | 60S ribosomal protein L3 | polymer | 398 | 45603.4 | 1 | Heterocephalus glaber | ||
| 9 | I (C) | Large ribosomal subunit protein uL4 | polymer | 363 | 41093.5 | 1 | UniProt (G5AN81) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L4 |
| 10 | J (D) | Large ribosomal subunit protein uL18 | polymer | 293 | 34050.4 | 1 | UniProt (A0AAX6P0W2) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L5 |
| 11 | K (E) | 60S ribosomal protein L6 | polymer | 224 | 25390.2 | 1 | Heterocephalus glaber | ||
| 12 | L (F) | 60S ribosomal protein L7 | polymer | 225 | 26658.8 | 1 | Heterocephalus glaber | ||
| 13 | M (G) | 60S ribosomal protein L7a | polymer | 215 | 24741.2 | 1 | Heterocephalus glaber | ||
| 14 | N (H) | 60S ribosomal protein L9 | polymer | 190 | 21627.2 | 1 | Heterocephalus glaber | ||
| 15 | O (I) | 60S ribosomal protein L10 | polymer | 213 | 24525.9 | 1 | UniProt (A0AAX6QHL6) | Heterocephalus glaber (naked mole-rat) | |
| 16 | P (J) | Large ribosomal subunit protein uL5 | polymer | 170 | 19399.5 | 1 | UniProt (A0AAX6TFX7) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L11 |
| 17 | Q (L) | 60S ribosomal protein L13 | polymer | 205 | 23584.7 | 1 | Heterocephalus glaber | ||
| 18 | R (M) | Large ribosomal subunit protein eL14 | polymer | 136 | 16041.2 | 1 | UniProt (G5ALX1) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L14 |
| 19 | S (N) | Ribosomal protein L15 | polymer | 203 | 24076.1 | 1 | UniProt (G5BFP9) | Heterocephalus glaber (naked mole-rat) | |
| 20 | T (O) | 60S ribosomal protein L13a | polymer | 199 | 23144.9 | 1 | Heterocephalus glaber | ||
| 21 | U (P) | 60S ribosomal protein L17 | polymer | 153 | 17758.7 | 1 | Heterocephalus glaber | ||
| 22 | V (Q) | 60S ribosomal protein L18 | polymer | 187 | 21520.4 | 1 | UniProt (G5B890) | Heterocephalus glaber (naked mole-rat) | |
| 23 | W (S) | Large ribosomal subunit protein eL20 | polymer | 176 | 20808.5 | 1 | UniProt (A0A0P6JCV6) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L18a |
| 24 | X (T) | Large ribosomal subunit protein eL21 | polymer | 159 | 18478.8 | 1 | UniProt (G5ATV5) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L21 |
| 25 | Y (U) | 60S ribosomal protein L22 | polymer | 99 | 11481.2 | 1 | Heterocephalus glaber | ||
| 26 | Z (V) | Large ribosomal subunit protein uL14 | polymer | 131 | 13972.4 | 1 | UniProt (G5BK67) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L23 |
| 27 | AA (X) | Large ribosomal subunit protein uL23 | polymer | 118 | 13727.2 | 1 | UniProt (A0AAX6PQW7) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L23a |
| 28 | BA (Y) | 60S ribosomal protein L26 | polymer | 134 | 15891.8 | 1 | Heterocephalus glaber | ||
| 29 | CA (Z) | 60S ribosomal protein L27 | polymer | 135 | 15704.6 | 1 | UniProt (G5BN91) | Heterocephalus glaber (naked mole-rat) | |
| 30 | DA (a) | 60S ribosomal protein L27a | polymer | 147 | 16504.4 | 1 | Heterocephalus glaber | ||
| 31 | EA (b) | 60S ribosomal protein L29 | polymer | 100 | 11712.0 | 1 | Heterocephalus glaber | ||
| 32 | FA (d) | Large ribosomal subunit protein eL31 | polymer | 107 | 12635.7 | 1 | UniProt (A0A0N8ESF6) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L31 |
| 33 | GA (e) | 60S ribosomal protein L32 | polymer | 128 | 15022.0 | 1 | UniProt (G5BYD8) | Heterocephalus glaber (naked mole-rat) | |
| 34 | HA (f) | Large ribosomal subunit protein eL33 | polymer | 110 | 12580.8 | 1 | UniProt (A0A0P6J939) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L35a |
| 35 | IA (g) | Large ribosomal subunit protein eL34 | polymer | 110 | 12522.1 | 1 | UniProt (G5AQL2) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L34 |
| 36 | JA (h) | Large ribosomal subunit protein uL29 | polymer | 121 | 14406.4 | 1 | UniProt (G5B6W3) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L35 |
| 37 | KA (i) | 60S ribosomal protein L36 | polymer | 102 | 11888.4 | 1 | Heterocephalus glaber | ||
| 38 | LA (j) | Ribosomal protein L37 | polymer | 86 | 10090.9 | 1 | UniProt (A0A0P6JT91) | Heterocephalus glaber (naked mole-rat) | |
| 39 | MA (k) | Large ribosomal subunit protein eL38 | polymer | 69 | 8107.8 | 1 | UniProt (A0A0P6IYP5) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L38 |
| 40 | NA (l) | Large ribosomal subunit protein eL39 | polymer | 50 | 6295.6 | 1 | UniProt (A0AAX6NYH3) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L39 |
| 41 | OA (m) | Ubiquitin-ribosomal protein eL40 fusion protein | polymer | 51 | 6112.5 | 1 | UniProt (G5C5A6) | Heterocephalus glaber (naked mole-rat) | Ubiquitin A-52 residue ribosomal protein fusion product 1 |
| 42 | PA (o) | 60S ribosomal protein L36a | polymer | 105 | 12358.8 | 1 | UniProt (G5BW65) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L36a-like |
| 43 | QA (p) | Large ribosomal subunit protein eL43 | polymer | 91 | 10168.2 | 1 | UniProt (E3VX70) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L37a |
| 44 | RA (r) | Large ribosomal subunit protein eL28 | polymer | 127 | 14508.1 | 1 | UniProt (G5BVZ2) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L28 |
| 45 | SA (s) | 60S acidic ribosomal protein P0 | polymer | 103 | 11823.0 | 1 | Heterocephalus glaber | ||
| 46 | TA (t) | 60S ribosomal protein L12 | polymer | 156 | 16832.5 | 1 | Heterocephalus glaber | ||
| 47 | UA (cc) | 40S ribosomal protein S28 | polymer | 61 | 6878.9 | 1 | Heterocephalus glaber | ||
| 48 | VA (ff) | Ubiquitin-ribosomal protein eS31 fusion protein | polymer | 67 | 7884.3 | 1 | UniProt (G5B8W4) | Heterocephalus glaber (naked mole-rat) | Ubiquitin carboxyl extension protein 80 |
| 49 | WA (gg) | Small ribosomal subunit protein RACK1 | polymer | 313 | 34669.1 | 1 | UniProt (A0A0P6J231) | Heterocephalus glaber (naked mole-rat) | Receptor for activated C kinase,Receptor of activated protein C kinase 1,Receptor of activated protein kinase C 1 |
| 50 | XA (dd) | Small ribosomal subunit protein uS14 | polymer | 55 | 6559.6 | 1 | UniProt (A0A0P6JEN2) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S29 |
| 51 | YA (AA) | Small ribosomal subunit protein uS2 | polymer | 214 | 24016.5 | 1 | UniProt (A0A0P6K1L6) | Heterocephalus glaber (naked mole-rat) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40 |
| 52 | ZA (BB) | 40S ribosomal protein S3a | polymer | 218 | 25317.8 | 1 | Heterocephalus glaber | ||
| 53 | AB (DD) | Small ribosomal subunit protein uS3 | polymer | 225 | 24956.3 | 1 | UniProt (G5AS76) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S3 |
| 54 | BB (FF) | Small ribosomal subunit protein uS7 | polymer | 189 | 21327.7 | 1 | UniProt (G5B7K7) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S5 |
| 55 | CB (KK) | Small ribosomal subunit protein eS10 | polymer | 96 | 11529.7 | 1 | UniProt (A0A0P6IZJ7) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S10 |
| 56 | DB (MM) | 40S ribosomal protein S12 | polymer | 124 | 13766.1 | 1 | UniProt (A0A0P6JDT6) | Heterocephalus glaber (naked mole-rat) | |
| 57 | EB (OO) | 40S ribosomal protein S14 | polymer | 134 | 14344.4 | 1 | Heterocephalus glaber | ||
| 58 | FB (PP) | 40S ribosomal protein S15 | polymer | 118 | 14002.6 | 1 | Heterocephalus glaber | ||
| 59 | GB (QQ) | Small ribosomal subunit protein uS9 | polymer | 141 | 15975.8 | 1 | UniProt (G5BJD7) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S16 |
| 60 | HB (RR) | Small ribosomal subunit protein eS17 | polymer | 132 | 15250.7 | 1 | UniProt (G5B1R5) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S17 |
| 61 | IB (SS) | Small ribosomal subunit protein uS13 | polymer | 145 | 16924.7 | 1 | UniProt (G5BAZ4) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S18 |
| 62 | JB (TT) | Small ribosomal subunit protein eS19 | polymer | 141 | 15608.9 | 1 | UniProt (G5AZQ1) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S19 |
| 63 | KB (UU) | 40S ribosomal protein S20 | polymer | 99 | 11324.4 | 1 | Heterocephalus glaber | ||
| 64 | LB (ZZ) | 40S ribosomal protein S25 | polymer | 75 | 8526.1 | 1 | UniProt (A0A0P6J730) | Heterocephalus glaber (naked mole-rat) | |
| 65 | MB (bb) | 40S ribosomal protein S27 | polymer | 82 | 9210.8 | 1 | UniProt (E3VX74) | Heterocephalus glaber (naked mole-rat) | |
| 66 | NB (ee) | 40S ribosomal protein S30 | polymer | 49 | 5686.8 | 1 | Heterocephalus glaber | ||
| 67 | OB (aa) | 40S ribosomal protein S26 | polymer | 98 | 11184.2 | 1 | Heterocephalus glaber | ||
| 68 | PB (CC) | 40S ribosomal protein S2 | polymer | 218 | 24057.4 | 1 | Heterocephalus glaber | ||
| 69 | QB (EE) | 40S ribosomal protein S4, X isoform | polymer | 262 | 29523.7 | 1 | Heterocephalus glaber | ||
| 70 | RB (GG) | 40S ribosomal protein S6 | polymer | 228 | 26399.2 | 1 | UniProt (A0A0P6J125) | Heterocephalus glaber (naked mole-rat) | |
| 71 | SB (HH) | 40S ribosomal protein S7 | polymer | 190 | 21716.4 | 1 | UniProt (G5C7L2) | Heterocephalus glaber (naked mole-rat) | |
| 72 | TB (II) | 40S ribosomal protein S8 | polymer | 206 | 24003.0 | 1 | Heterocephalus glaber | ||
| 73 | UB (JJ) | Small ribosomal subunit protein uS4 | polymer | 180 | 21279.3 | 1 | UniProt (G5CBG2) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S9 |
| 74 | VB (LL) | Small ribosomal subunit protein uS17 | polymer | 149 | 17328.4 | 1 | UniProt (A0A0P6J0Q6) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S11 |
| 75 | WB (NN) | Small ribosomal subunit protein uS15 | polymer | 149 | 17057.1 | 1 | UniProt (G5B0I4) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S13 |
| 76 | XB (VV) | 40S ribosomal protein S21 | polymer | 83 | 9139.3 | 1 | Heterocephalus glaber | ||
| 77 | YB (WW) | Small ribosomal subunit protein uS8 | polymer | 129 | 14734.4 | 1 | UniProt (G5AY31) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S15a |
| 78 | ZB (XX) | 40S ribosomal protein S23 | polymer | 122 | 13609.1 | 1 | Heterocephalus glaber | ||
| 79 | AC (YY) | 40S ribosomal protein S24 | polymer | 125 | 14489.2 | 1 | UniProt (A0AAX6T3G5) | Heterocephalus glaber (naked mole-rat) | |
| 80 | BC (W) | Ribosomal protein L19 | polymer | 180 | 21613.0 | 1 | UniProt (G5BRW3) | Heterocephalus glaber (naked mole-rat) | |
| 81 | CC (c) | Large ribosomal subunit protein eL24 | polymer | 121 | 14131.5 | 1 | UniProt (G5C020) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L24 |
| 82 | DC (u) | Large ribosomal subunit protein eL30 | polymer | 100 | 11127.1 | 1 | UniProt (G5B8Y2) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L30 |
| 83 | EC (Cc) | P/E tRNA | polymer | 76 | 24496.6 | 1 | Heterocephalus glaber | ||
| 84 | FC (Bb) | tRNA (65-MER) | polymer | 65 | 21221.8 | 1 | Heterocephalus glaber | ||
| 85 | GC (Dd) | mRNA | polymer | 13 | 3935.2 | 1 | Heterocephalus glaber | ||
| 86 | AD, BD, CD, DD, ED... (B2, A6, A5, P, A7...) | MAGNESIUM ION | non-polymer | 24.3 | 36 | Chemie (MG) | |||
| 87 | OD, PD, RD, SD, TD... (g, j, m, o, p...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 88 | AE, BE, CE, ZD (A6, Cc, Bb, B2) | water | water | 18.0 | 15 | Chemie (HOH) |
Sequence modifications
A: 2 - 249 (UniProt: A0A0P6J3A4)
C: 2 - 361 (UniProt: G5AN81)
h: 3 - 123 (UniProt: G5B6W3)
r: 2 - 127 (UniProt: G5BVZ2)
AA: 2 - 214 (UniProt: A0A0P6K1L6)
SS: 2 - 145 (UniProt: G5BAZ4)
| PDB | External Database | Details |
|---|---|---|
| Lys 72 | Arg 163 | conflict |
| Lys 123 | Arg 214 | conflict |
| Lys 128 | Arg 219 | conflict |
| Lys 147 | Arg 238 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ace 1 | - | acetylation |
| Asp 262 | Glu 262 | conflict |
| Gly 362 | - | expression tag |
| Gly 363 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Tyr 119 | Phe 119 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ace 1 | - | acetylation |
| PDB | External Database | Details |
|---|---|---|
| Ace 1 | - | acetylation |
| PDB | External Database | Details |
|---|---|---|
| Ace 1 | - | acetylation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 3282520.2 | |
| Non-Polymers* | Number of molecules | 44 |
| Total formula weight | 1398.3 | |
| All* | Total formula weight | 3283918.4 |
