9Y1P
C387S variant of D-ornithine/D-lysine decarboxylase complexed with PMP and cadaverine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | D-ornithine/D-lysine decarboxylase | polymer | 478 | 54160.1 | 2 | UniProt (Q8ZNC4) | Salmonella enterica subsp. enterica serovar Typhimurium | D-Orn/D-Lys decarboxylase,DOKDC |
| 2 | C, L (A, B) | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE | non-polymer | 248.2 | 2 | Chemie (PMP) PubChem (1053) | |||
| 3 | D, F, I, K, M... (A, B) | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 6 | Chemie (DMS) PubChem (679) | |||
| 4 | E, G, N (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 5 | H (A) | PENTANE-1,5-DIAMINE | non-polymer | 102.2 | 1 | Chemie (N2P) PubChem (273) | |||
| 6 | J, P (A, B) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) PubChem (813) | |||
| 7 | Q (B) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) PubChem (312) | |||
| 8 | R, S (A, B) | water | water | 18.0 | 871 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 465 (UniProt: Q8ZNC4)
| PDB | External Database | Details |
|---|---|---|
| Ser 387 | Cys 387 | engineered mutation |
| Leu 466 | - | expression tag |
| Leu 467 | - | expression tag |
| Ala 468 | - | expression tag |
| Ala 469 | - | expression tag |
| Ala 470 | - | expression tag |
| Leu 471 | - | expression tag |
| Glu 472 | - | expression tag |
| His 473 | - | expression tag |
| His 474 | - | expression tag |
| His 475 | - | expression tag |
| His 476 | - | expression tag |
| His 477 | - | expression tag |
| His 478 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 108320.2 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1367.2 | |
| All* | Total formula weight | 109687.3 |
