9XO1
PEDV HNXX spike trimer with two D0 down in complex with two N19 Fabs
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, E (A, B, C) | Spike glycoprotein | polymer | 1327 | 145118.3 | 3 | UniProt (A0A7G4RNN0) | Porcine epidemic diarrhea virus | S glycoprotein,E2,Peplomer protein |
| 2 | C, F (F, D) | N19 VH | polymer | 144 | 15527.1 | 2 | Sus scrofa | ||
| 3 | D, G (G, E) | N19 VL | polymer | 129 | 13326.1 | 2 | Sus scrofa | ||
| 4 | H, P, V (H, P, V) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 5 | I, J, K, L, M... (I, J, K, L, M...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 6 | AA, BA, CA, DA, EA... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) PubChem (24139) | |||
| 7 | IA, JA, QA, RA, SA... (A, B, C) | PALMITOLEIC ACID | non-polymer | 254.4 | 6 | Chemie (PAM) PubChem (445638) |
Sequence modifications
A, B, C: 1 - 1327 (UniProt: A0A7G4RNN0)
| PDB | External Database | Details |
|---|---|---|
| Ser 10 | Phe 10 | conflict |
| Gly 888 | Arg 888 | conflict |
| Asn 908 | Ser 908 | conflict |
| Met 1010 | Ile 1010 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 493061.4 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 7825.3 | |
| Non-Polymers* | Number of molecules | 30 |
| Total formula weight | 6835.4 | |
| All* | Total formula weight | 507722.2 |
