9XNY
Focus refinement of PEDV HNXX spike monomer with D0 down in complex with N19 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike glycoprotein | polymer | 1327 | 145118.3 | 1 | UniProt (A0A7G4RNN0) | Porcine epidemic diarrhea virus | S glycoprotein,E2,Peplomer protein |
| 2 | B (F) | N19 VH | polymer | 144 | 15527.1 | 1 | Sus scrofa | ||
| 3 | C (G) | N19 VL | polymer | 129 | 13326.1 | 1 | Sus scrofa | ||
| 4 | D, E, F, H, I (B, C, D, H, I) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 5 | In PDB GlyTouCan (G42666HT) | |||
| 5 | G (E) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 6 | J (J) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 7 | K, L, M, N, O (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) PubChem (24139) | |||
| 8 | P (A) | PALMITOLEIC ACID | non-polymer | 254.4 | 1 | Chemie (PAM) PubChem (445638) |
Sequence modifications
A: 1 - 1327 (UniProt: A0A7G4RNN0)
| PDB | External Database | Details |
|---|---|---|
| Ser 10 | Phe 10 | conflict |
| Gly 888 | Arg 888 | conflict |
| Asn 908 | Ser 908 | conflict |
| Met 1010 | Ile 1010 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 173971.6 | |
| Branched | Number of molecules | 7 |
| Total formula weight | 3619.4 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1360.4 | |
| All* | Total formula weight | 178951.4 |
