9XK3
In situ C2S2M2L4-type PSII-LHCII supercomplex, core, protomer 1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1A) | Photosystem II protein D1 | polymer | 334 | 36917.0 | 1 | UniProt (P0C432) | Oryza sativa Japonica Group (Japanese rice) | PSII D1 protein,Photosystem II Q(B) protein |
| 2 | B (1B) | Photosystem II CP47 reaction center protein | polymer | 503 | 55632.1 | 1 | UniProt (P0C362) | Oryza sativa Japonica Group (Japanese rice) | PSII 47 kDa protein,Protein CP-47 |
| 3 | C (1C) | Photosystem II CP43 reaction center protein | polymer | 450 | 49289.4 | 1 | UniProt (P0C365) | Oryza sativa Japonica Group (Japanese rice) | PSII 43 kDa protein,Protein CP-43 |
| 4 | D (1D) | Photosystem II D2 protein | polymer | 341 | 38268.6 | 1 | UniProt (P0C435) | Oryza sativa Japonica Group (Japanese rice) | PSII D2 protein,Photosystem Q(A) protein |
| 5 | E (1E) | Cytochrome b559 subunit alpha | polymer | 75 | 8654.7 | 1 | UniProt (P0C368) | Oryza sativa Japonica Group (Japanese rice) | PSII reaction center subunit V |
| 6 | F (1F) | Cytochrome b559 subunit beta | polymer | 36 | 4142.9 | 1 | UniProt (P0C399) | Oryza sativa Japonica Group (Japanese rice) | PSII reaction center subunit VI |
| 7 | G (1H) | Photosystem II reaction center protein H | polymer | 60 | 6472.6 | 1 | UniProt (P0C420) | Oryza sativa Japonica Group (Japanese rice) | PSII-H,Photosystem II 10 kDa phosphoprotein |
| 8 | H (1I) | Photosystem II reaction center protein I | polymer | 34 | 3912.7 | 1 | UniProt (P0C405) | Oryza sativa Japonica Group (Japanese rice) | PSII-I,PSII 4.8 kDa protein |
| 9 | I (1J) | Photosystem II reaction center protein J | polymer | 35 | 3586.2 | 1 | UniProt (P0C414) | Oryza sativa Japonica Group (Japanese rice) | PSII-J |
| 10 | J (1K) | Photosystem II reaction center protein K | polymer | 37 | 4273.1 | 1 | UniProt (P0C408) | Oryza sativa Japonica Group (Japanese rice) | PSII-K |
| 11 | K (1L) | Photosystem II reaction center protein L | polymer | 37 | 4366.9 | 1 | UniProt (P0C416) | Oryza sativa Japonica Group (Japanese rice) | PSII-L |
| 12 | L (1M) | Photosystem II reaction center protein M | polymer | 33 | 3668.5 | 1 | UniProt (P0C411) | Oryza sativa Japonica Group (Japanese rice) | PSII-M |
| 13 | M (1O) | 33 kDa subunit of oxygen evolving system of photosystem II | polymer | 248 | 26609.8 | 1 | UniProt (Q943W1) | Oryza sativa Japonica Group (Japanese rice) | 33 kDa thylakoid membrane protein,OEC 33 kDa subunit |
| 14 | N (1P) | 23 kDa subunit of oxygen evolving system of photosystem II | polymer | 186 | 20122.3 | 1 | UniProt (Q8GTK4) | Oryza sativa Japonica Group (Japanese rice) | 23 kDa thylakoid membrane protein,OEC 23 kDa subunit |
| 15 | O (1T) | Photosystem II reaction center protein T | polymer | 32 | 3692.5 | 1 | UniProt (P0C427) | Oryza sativa Japonica Group (Japanese rice) | PSII-T |
| 16 | P (1U) | Os02g0581100 protein | polymer | 27 | 3009.6 | 1 | UniProt (Q0E032) | Oryza sativa Japonica Group (Japanese rice) | |
| 17 | Q (1V) | Photosystem II 10 kDa polypeptide, chloroplastic | polymer | 105 | 10861.4 | 1 | UniProt (Q8H4P7) | Oryza sativa Japonica Group (Japanese rice) | |
| 18 | R (1W) | Photosystem II reaction center W protein, chloroplastic | polymer | 54 | 5866.5 | 1 | UniProt (Q5ZBY9) | Oryza sativa Japonica Group (Japanese rice) | PSII 6.1 kDa protein |
| 19 | S (1X) | Os07g0673550 protein | polymer | 39 | 3927.7 | 1 | UniProt (Q7EXX2) | Oryza sativa Japonica Group (Japanese rice) | Ultraviolet-B-repressible protein,Photosystem II reaction centre X protein containing protein, expressed |
| 20 | T (1Y) | Os08g0119800 protein | polymer | 34 | 3845.6 | 1 | UniProt (Q6ZJ41) | Oryza sativa Japonica Group (Japanese rice) | cDNA clone:001-024-H10,full insert sequence,cDNA clone:J013109P06,cDNA clone:J013136L01,Photosystem II core complex proteins psbY, chloroplastic |
| 21 | U (1Z) | Photosystem II reaction center protein Z | polymer | 62 | 6582.8 | 1 | UniProt (P0C429) | Oryza sativa Japonica Group (Japanese rice) | PSII-Z |
| 22 | V (1A) | FE (II) ION | non-polymer | 55.8 | 1 | Chemie (FE2) PubChem (27284) | |||
| 23 | GA, GB, GC, HA, HB... (1B, 1C, 1D, 1A) | CHLOROPHYLL A | non-polymer | 893.5 | 35 | Chemie (CLA) | |||
| 24 | X, Y (1A) | PHEOPHYTIN A | non-polymer | 871.2 | 2 | Chemie (PHO) | |||
| 25 | AA (1A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 1 | Chemie (OEX) | |||
| 26 | AD, BA, CD, ID, LC... (1I, 1A, 1J, 1T, 1D...) | BETA-CAROTENE | non-polymer | 536.9 | 11 | Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668) | |||
| 27 | CA, MC, UC, XC (1A, 1D, 1E, 1H) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 28 | BB, BC, CC, DA, EA... (1B, 1C, 1A, 1M, 1D) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 10 | Chemie (SQD) PubChem (25147486) | |||
| 29 | AB, AC, BD, CB, DC... (1B, 1C, 1I, 1J, 1K...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 22 | Chemie (LHG) | |||
| 30 | DB, EB, EC (1B, 1C) | (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE | non-polymer | 689.0 | 3 | Chemie (MGE) PubChem (5327038) | |||
| 31 | FB, VB, WB, XB (1B, 1C) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 4 | Chemie (DGD) PubChem (15991538) | |||
| 32 | TB, UB (1C) | ALPHA-LINOLENIC ACID | non-polymer | 278.4 | 2 | Chemie (LNL) PubChem (5280934) | |||
| 33 | IC (1D) | BICARBONATE ION | non-polymer | 61.0 | 1 | Chemie (BCT) PubChem (769) | |||
| 34 | VC (1E) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 1 | Chemie (HEM) | |||
| 35 | MD (1X) | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE | non-polymer | 705.0 | 1 | Chemie (3PH) PubChem (447938) |
Sequence modifications
1O: 1 - 247 (UniProt: Q943W1)
| PDB | External Database | Details |
|---|---|---|
| Ser 248 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 303703.0 | |
| Non-Polymers* | Number of molecules | 98 |
| Total formula weight | 73972.6 | |
| All* | Total formula weight | 377675.5 |
