9XJ9
In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Chlorophyll a-b binding protein, chloroplastic | polymer | 200 | 22068.0 | 1 | UniProt (Q9ZSU0) | Oryza sativa Japonica Group (Japanese rice) | |
| 2 | B (2) | Chlorophyll a-b binding protein, chloroplastic | polymer | 207 | 22765.8 | 1 | UniProt (Q6ZL95) | Oryza sativa Japonica Group (Japanese rice) | |
| 3 | C (3) | Chlorophyll a-b binding protein, chloroplastic | polymer | 222 | 24335.8 | 1 | UniProt (Q6H748) | Oryza sativa Japonica Group (Japanese rice) | |
| 4 | D (4) | Chlorophyll A-B binding protein | polymer | 198 | 22188.2 | 1 | UniProt (B7EWI6) | Oryza sativa Japonica Group (Japanese rice) | cDNA clone:001-002-F08,full insert sequence,cDNA clone:006-204-G03,cDNA clone:006-302-E04,cDNA clone:J013120A20 |
| 5 | E (A) | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 742 | 82310.1 | 1 | UniProt (P0C355) | Oryza sativa Japonica Group (Japanese rice) | PSI-A,PsaA |
| 6 | F (B) | Photosystem I P700 chlorophyll a apoprotein A2 | polymer | 732 | 82378.5 | 1 | UniProt (P0C356) | Oryza sativa Japonica Group (Japanese rice) | PSI-B,PsaB |
| 7 | G (C) | Photosystem I iron-sulfur center | polymer | 80 | 8778.1 | 1 | UniProt (P0C359) | Oryza sativa Japonica Group (Japanese rice) | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
| 8 | H (D) | Photosystem I reaction center subunit II, chloroplastic | polymer | 143 | 15983.3 | 1 | UniProt (Q84PB4) | Oryza sativa Japonica Group (Japanese rice) | |
| 9 | I (E) | Photosystem I reaction center subunit IV | polymer | 66 | 7466.4 | 1 | UniProt (Q6Z3V7) | Oryza sativa Japonica Group (Japanese rice) | |
| 10 | J (F) | Photosystem I reaction center subunit III | polymer | 158 | 17514.4 | 1 | UniProt (Q8S7H8) | Oryza sativa Japonica Group (Japanese rice) | PSI-F |
| 11 | K (G) | Photosystem I reaction center subunit V, chloroplastic | polymer | 97 | 10711.0 | 1 | UniProt (Q652C4) | Oryza sativa Japonica Group (Japanese rice) | PSI-G |
| 12 | L (H) | Photosystem I reaction center subunit VI, chloroplastic | polymer | 93 | 10002.3 | 1 | UniProt (Q0DG05) | Oryza sativa Japonica Group (Japanese rice) | PSI-H,Light-harvesting complex I 11 kDa protein,Protein GOS5 |
| 13 | M (I) | Photosystem I reaction center subunit VIII | polymer | 30 | 3293.0 | 1 | UniProt (P0C371) | Oryza sativa Japonica Group (Japanese rice) | PSI-I |
| 14 | N (J) | Photosystem I reaction center subunit IX | polymer | 44 | 4981.9 | 1 | UniProt (P0C373) | Oryza sativa Japonica Group (Japanese rice) | PSI-J |
| 15 | O (K) | Photosystem I reaction center subunit psaK, chloroplastic | polymer | 88 | 8884.3 | 1 | UniProt (Q84PB5) | Oryza sativa Japonica Group (Japanese rice) | PSI-K,Photosystem I subunit X |
| 16 | P (L) | Photosystem I reaction center subunit XI, chloroplastic | polymer | 163 | 17252.8 | 1 | UniProt (Q2QSR5) | Oryza sativa Japonica Group (Japanese rice) | PSI subunit V |
| 17 | Q (N) | Photosystem I reaction center subunit N, chloroplastic | polymer | 84 | 9747.0 | 1 | UniProt (B8BNI3) | Oryza sativa Japonica Group (Japanese rice) | |
| 18 | R (O) | H0622F05.3 protein | polymer | 92 | 10276.7 | 1 | UniProt (Q01L93) | Oryza sativa Japonica Group (Japanese rice) | OSIGBa0137L20.7 protein |
| 19 | S, U (X, Z) | Chlorophyll a-b binding protein 1, chloroplastic | polymer | 218 | 23368.4 | 2 | UniProt (P12330) | Oryza sativa Japonica Group (Japanese rice) | LHCII type I CAB-1,LHCP |
| 20 | T (Y) | Chlorophyll a-b binding protein, chloroplastic | polymer | 222 | 24045.2 | 1 | UniProt (Q10HD0) | Oryza sativa Japonica Group (Japanese rice) | LHCII type I CAB,LHCP |
| 21 | AC, FK, GJ, HK, IK... (3, Y, X, Z, 1...) | CHLOROPHYLL B | non-polymer | 907.5 | 30 | Chemie (CHL) | |||
| 22 | AA, AF, AG, AI, AJ... (1, A, B, G, O...) | CHLOROPHYLL A | non-polymer | 893.5 | 177 | Chemie (CLA) | |||
| 23 | AB, AD, DD, EA, NB (2, 4, 1, 3) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 5 | Chemie (LUT) PubChem (448437) | |||
| 24 | BB, BD, FA, OB (2, 4, 1, 3) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 4 | Chemie (XAT) PubChem (448438) | |||
| 25 | CB, CD, CH, CI, DI... (2, 4, B, I, J...) | BETA-CAROTENE | non-polymer | 536.9 | 30 | Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668) | |||
| 26 | AE, AH, BE, BH, DB... (A, B, 2, 1, 4...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 24 | Chemie (LHG) | |||
| 27 | JA, QB, QH, RB, RH... (1, 3, F, N) | (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE | non-polymer | 689.0 | 6 | Chemie (MGE) PubChem (5327038) | |||
| 28 | OD, QG (A, B) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) PubChem (5284607) | |||
| 29 | MH, NH, QD (C, A) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 30 | CE (A) | CHLOROPHYLL A ISOMER | non-polymer | 893.5 | 1 | Chemie (CL0) | |||
| 31 | GI, UH, VI, ZG (J, G, O, B) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 4 | Chemie (DGD) PubChem (15991538) |
Sequence modifications
O: 36 - 127 (UniProt: Q01L93)
| PDB | External Database | Details |
|---|---|---|
| Gln 39 | Arg 54 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 451719.8 | |
| Non-Polymers* | Number of molecules | 286 |
| Total formula weight | 234857.8 | |
| All* | Total formula weight | 686577.7 |
