9XJ1
In situ structure of the PSI-LHCI supercomplex from Oryza sativa
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Chlorophyll a-b binding protein, chloroplastic | polymer | 200 | 22068.0 | 1 | UniProt (Q9ZSU0) | Oryza sativa Japonica Group (Japanese rice) | |
| 2 | B (2) | Chlorophyll a-b binding protein, chloroplastic | polymer | 208 | 22836.9 | 1 | UniProt (Q6ZL95) | Oryza sativa Japonica Group (Japanese rice) | |
| 3 | C (3) | Chlorophyll a-b binding protein, chloroplastic | polymer | 223 | 24450.9 | 1 | UniProt (Q6H748) | Oryza sativa Japonica Group (Japanese rice) | |
| 4 | D (4) | Chlorophyll a-b binding protein, chloroplastic | polymer | 198 | 22188.2 | 1 | UniProt (Q6YWJ7) | Oryza sativa Japonica Group (Japanese rice) | |
| 5 | E (A) | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 744 | 82463.2 | 1 | UniProt (P0C353) | Oryza sativa Japonica Group (Japanese rice) | PSI-A,PsaA |
| 6 | F (B) | Photosystem I P700 chlorophyll a apoprotein A2 | polymer | 734 | 82638.8 | 1 | UniProt (P0C356) | Oryza sativa Japonica Group (Japanese rice) | PSI-B,PsaB |
| 7 | G (C) | Photosystem I iron-sulfur center | polymer | 81 | 8909.3 | 1 | UniProt (P0C359) | Oryza sativa Japonica Group (Japanese rice) | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
| 8 | H (D) | Photosystem I reaction center subunit II, chloroplastic | polymer | 143 | 15983.3 | 1 | UniProt (Q84PB4) | Oryza sativa Japonica Group (Japanese rice) | |
| 9 | I (E) | Photosystem I reaction center subunit IV | polymer | 68 | 7692.7 | 1 | UniProt (Q6Z3V7) | Oryza sativa Japonica Group (Japanese rice) | |
| 10 | J (F) | Photosystem I reaction center subunit III | polymer | 158 | 17514.4 | 1 | UniProt (Q8S7H8) | Oryza sativa Japonica Group (Japanese rice) | PSI-F |
| 11 | K (G) | Photosystem I reaction center subunit V, chloroplastic | polymer | 97 | 10711.0 | 1 | UniProt (Q652C4) | Oryza sativa Japonica Group (Japanese rice) | PSI-G |
| 12 | L (H) | Photosystem I reaction center subunit VI, chloroplastic | polymer | 93 | 10002.3 | 1 | UniProt (Q0DG05) | Oryza sativa Japonica Group (Japanese rice) | PSI-H,Light-harvesting complex I 11 kDa protein,Protein GOS5 |
| 13 | M (I) | Photosystem I reaction center subunit VIII | polymer | 30 | 3293.0 | 1 | UniProt (P0C371) | Oryza sativa Japonica Group (Japanese rice) | PSI-I |
| 14 | N (J) | Photosystem I reaction center subunit IX | polymer | 44 | 4981.9 | 1 | UniProt (P0C373) | Oryza sativa Japonica Group (Japanese rice) | PSI-J |
| 15 | O (K) | Photosystem I reaction center subunit psaK, chloroplastic | polymer | 88 | 8884.3 | 1 | UniProt (Q84PB5) | Oryza sativa Japonica Group (Japanese rice) | PSI-K,Photosystem I subunit X |
| 16 | P (L) | Photosystem I reaction center subunit XI, chloroplastic | polymer | 163 | 17252.8 | 1 | UniProt (Q2QSR5) | Oryza sativa Japonica Group (Japanese rice) | PSI subunit V |
| 17 | Q (N) | Photosystem I reaction center subunit N, chloroplastic | polymer | 84 | 9747.0 | 1 | UniProt (Q2QWN3) | Oryza sativa Japonica Group (Japanese rice) | |
| 18 | R (O) | Os04g0414700 protein | polymer | 92 | 10276.7 | 1 | UniProt (Q7XTG4) | Oryza sativa Japonica Group (Japanese rice) | |
| 19 | HB, IA, LB, LC, MC... (2, 1, 4, 3) | CHLOROPHYLL B | non-polymer | 907.5 | 12 | Chemie (CHL) | |||
| 20 | AA, AC, AF, AG, AH... (1, 3, A, B, O...) | CHLOROPHYLL A | non-polymer | 893.5 | 152 | Chemie (CLA) | |||
| 21 | BA, NB, OA, XC, ZA (1, 3, 4, 2) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 5 | Chemie (LUT) PubChem (448437) | |||
| 22 | AB, CA, OB, YC (2, 1, 3, 4) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 4 | Chemie (XAT) PubChem (448438) | |||
| 23 | AD, AI, BB, BI, DA... (4, I, 2, J, 1...) | BETA-CAROTENE | non-polymer | 536.9 | 31 | Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668) | |||
| 24 | BD, CB, DB, EA, EB... (4, 2, 1, A, B...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 18 | Chemie (LHG) | |||
| 25 | CD, CI, GA, HA, NH... (4, J, 1, F, 3...) | (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE | non-polymer | 689.0 | 12 | Chemie (MGE) PubChem (5327038) | |||
| 26 | MD, NG (A, B) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) PubChem (5284607) | |||
| 27 | JH, KH, PD (C, A) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 28 | AE (A) | CHLOROPHYLL A ISOMER | non-polymer | 893.5 | 1 | Chemie (CL0) | |||
| 29 | EI, SH, UI, VG (J, G, O, B) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 4 | Chemie (DGD) PubChem (15991538) |
Sequence modifications
A: 7 - 750 (UniProt: P0C353)
| PDB | External Database | Details |
|---|---|---|
| Leu 116 | Trp 116 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 381895.0 | |
| Non-Polymers* | Number of molecules | 244 |
| Total formula weight | 196519.0 | |
| All* | Total formula weight | 578414.0 |
