9XID
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs, focused refinement of RBD and Fab region
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | Heavy chain of C092 Fab | polymer | 228 | 24114.1 | 1 | Homo sapiens (human) | ||
| 2 | B (L) | Light chain of C092 Fab | polymer | 217 | 22886.1 | 1 | Homo sapiens | ||
| 3 | C (A) | Spike protein S1 | polymer | 200 | 22521.5 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 | |
| 4 | D (D) | Heavy chain of R102-9 Fab | polymer | 221 | 23422.4 | 1 | Homo sapiens (human) | ||
| 5 | E (B) | Light chain of R102-9 Fab | polymer | 215 | 23547.1 | 1 | Homo sapiens (human) |
Sequence modifications
A: 330 - 529 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| His 339 | Gly 339 | variant |
| Thr 346 | Arg 346 | variant |
| Ile 368 | Leu 368 | variant |
| Phe 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Ala 376 | Thr 376 | variant |
| Asn 405 | Asp 405 | variant |
| Ser 408 | Arg 408 | variant |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Pro 445 | Val 445 | variant |
| Ser 446 | Gly 446 | variant |
| Phe 455 | Leu 455 | variant |
| Leu 456 | Phe 456 | variant |
| Lys 460 | Asn 460 | variant |
| Val 475 | Ala 475 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Pro 486 | Phe 486 | variant |
| Ser 490 | Phe 490 | variant |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 116491.2 | |
| All* | Total formula weight | 116491.2 |
