9XA7
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state A
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (UA) | Periodic tryptophan protein 2-like protein | polymer | 904 | 100897.5 | 1 | UniProt (G0SF93) Pfam (PF00400) Pfam (PF04003) | Thermochaetoides thermophila | |
| 2 | B (UB) | Nucleolar complex protein 14 | polymer | 907 | 103960.7 | 1 | UniProt (G0SDW0) Pfam (PF04147) | Thermochaetoides thermophila | |
| 3 | C (UC) | Sas10 C-terminal domain-containing protein | polymer | 648 | 73214.6 | 1 | UniProt (G0S4H3) Pfam (PF04000) Pfam (PF09368) | Thermochaetoides thermophila | |
| 4 | D (UD) | UTP4 | polymer | 884 | 97696.5 | 1 | UniProt (G0SCT7) Pfam (PF00400) | Thermochaetoides thermophila | |
| 5 | E (UF) | U3 snoRNP protein | polymer | 414 | 46924.8 | 1 | UniProt (G0S387) Pfam (PF08640) Pfam (PF23233) | Thermochaetoides thermophila | |
| 6 | F (UG) | U three protein 7 | polymer | 558 | 63629.4 | 1 | UniProt (G0RZ99) Pfam (PF00400) Pfam (PF08149) | Thermochaetoides thermophila | |
| 7 | G (UJ) | U3 small nucleolar RNA-associated protein 10 | polymer | 1802 | 198508.4 | 1 | UniProt (G0S5L1) Pfam (PF12397) Pfam (PF23243) Pfam (PF08146) | Thermochaetoides thermophila | |
| 8 | H (UK) | U3 small nucleolar RNA-associated protein 11 | polymer | 270 | 31379.7 | 1 | UniProt (G0SF32) Pfam (PF03998) | Thermochaetoides thermophila | U3 snoRNA-associated protein 11 |
| 9 | I (UL) | Small-subunit processome Utp12 domain-containing protein | polymer | 962 | 107573.0 | 1 | UniProt (G0RZL9) Pfam (PF25173) Pfam (PF25172) Pfam (PF04003) | Thermochaetoides thermophila | |
| 10 | J (UM) | U3 small nucleolar RNA-associated protein 13 C-terminal domain-containing protein | polymer | 912 | 100430.4 | 1 | UniProt (G0SG95) Pfam (PF00400) Pfam (PF08625) | Thermochaetoides thermophila | |
| 11 | K (UN) | UTP14 | polymer | 177 | 20779.1 | 1 | Thermochaetoides thermophila | ||
| 12 | L (UO) | U3 small nucleolar RNA-associated protein 15 C-terminal domain-containing protein | polymer | 557 | 60524.1 | 1 | UniProt (G0SEI5) Pfam (PF00400) Pfam (PF09384) | Thermochaetoides thermophila | |
| 13 | M (UQ) | UTP17 | polymer | 960 | 105039.7 | 1 | UniProt (G0SCS8) Pfam (PF23869) | Thermochaetoides thermophila | |
| 14 | N (UR) | UTP18 | polymer | 618 | 69135.1 | 1 | UniProt (G0SBN9) | Thermochaetoides thermophila | |
| 15 | O (UU) | Putative U3 snoRNP protein | polymer | 1049 | 115122.0 | 1 | UniProt (G0S872) Pfam (PF25171) Pfam (PF25168) Pfam (PF04192) | Thermochaetoides thermophila | |
| 16 | P (UX) | UTP24 | polymer | 193 | 22136.0 | 1 | Thermochaetoides thermophila | ||
| 17 | Q (UZ) | Ribosome biogenesis protein C8F11.04 | polymer | 391 | 43700.5 | 1 | UniProt (G0S7X0) Pfam (PF00687) | Thermochaetoides thermophila | |
| 18 | R, S (CA, CB) | rRNA 2'-O-methyltransferase fibrillarin | polymer | 313 | 32960.8 | 2 | UniProt (G0SGY2) Pfam (PF01269) | Thermochaetoides thermophila | Histone-glutamine methyltransferase |
| 19 | T (CC) | Nucleolar protein 56 | polymer | 523 | 57830.7 | 1 | UniProt (G0S2U4) Pfam (PF08156) Pfam (PF01798) | Thermochaetoides thermophila | |
| 20 | U (CD) | Nucleolar protein 58 | polymer | 582 | 64292.1 | 1 | UniProt (G0RYF6) Pfam (PF08156) Pfam (PF01798) | Thermochaetoides thermophila | |
| 21 | V, W (CE, CF) | H/ACA ribonucleoprotein complex subunit 2 | polymer | 127 | 13831.9 | 2 | UniProt (G0SGM0) Pfam (PF01248) | Thermochaetoides thermophila | Nucleolar protein family A member 2 |
| 22 | X (CG) | Ribosomal RNA-processing protein | polymer | 630 | 69610.4 | 1 | UniProt (G0SG51) Pfam (PF00400) | Thermochaetoides thermophila | |
| 23 | Y (CH) | RNA 3'-terminal phosphate cyclase-like protein | polymer | 411 | 43399.8 | 1 | UniProt (G0S0B1) Pfam (PF01137) Pfam (PF05189) | Thermochaetoides thermophila | |
| 24 | Z (CI) | Bms1-type G domain-containing protein | polymer | 1163 | 134172.3 | 1 | UniProt (G0S445) Pfam (PF01926) Pfam (PF08142) Pfam (PF04950) | Thermochaetoides thermophila | |
| 25 | AA (CJ) | U3 small nucleolar ribonucleoprotein protein IMP3 | polymer | 183 | 21802.4 | 1 | UniProt (G0SDL4) Pfam (PF00163) Pfam (PF01479) | Thermochaetoides thermophila | U3 small nucleolar ribonucleoprotein protein imp3 |
| 26 | BA (CK) | U3 small nucleolar ribonucleoprotein protein IMP4 | polymer | 297 | 34216.3 | 1 | UniProt (G0SE90) Pfam (PF04427) | Thermochaetoides thermophila | |
| 27 | CA (CL) | Putative U3 small nucleolar ribonucleoprotein protein | polymer | 785 | 86082.1 | 1 | UniProt (G0S9I7) Pfam (PF04006) | Thermochaetoides thermophila | |
| 28 | DA (CM) | DDB1- and CUL4-associated factor 13 | polymer | 446 | 50869.8 | 1 | UniProt (G0RY94) Pfam (PF00400) Pfam (PF04158) | Thermochaetoides thermophila | WD repeat and SOF domain-containing protein 1 |
| 29 | EA, FA (CN, CO) | Nucleolar essential protein 1 | polymer | 252 | 27936.2 | 2 | UniProt (G0SAY9) Pfam (PF03587) | Thermochaetoides thermophila | |
| 30 | GA (CP) | KRR1 small subunit processome component | polymer | 322 | 37500.8 | 1 | UniProt (G0S3V7) Pfam (PF17903) Pfam (PF21800) | Thermochaetoides thermophila | KRR-R motif-containing protein 1 |
| 31 | HA (CQ) | Pre-rRNA-processing protein PNO1 | polymer | 259 | 28715.0 | 1 | UniProt (G0S3T2) Pfam (PF22891) | Thermochaetoides thermophila | |
| 32 | IA, JA (CR, CS) | RNA cytidine acetyltransferase | polymer | 1073 | 119795.1 | 2 | UniProt (G0S273) Pfam (PF08351) Pfam (PF05127) Pfam (PF13718) Pfam (PF13725) | Thermochaetoides thermophila | 18S rRNA cytosine acetyltransferase |
| 33 | KA (CT) | Fcf2 pre-rRNA processing C-terminal domain-containing protein | polymer | 203 | 22569.1 | 1 | UniProt (G0S4E3) Pfam (PF08698) | Thermochaetoides thermophila | |
| 34 | LA (Ca) | Small ribosomal subunit protein eS1 | polymer | 255 | 29245.2 | 1 | UniProt (G0S7T8) Pfam (PF01015) | Thermochaetoides thermophila | |
| 35 | MA (Cc) | 40S ribosomal protein s5-like protein | polymer | 212 | 23679.2 | 1 | UniProt (G0S1Z0) Pfam (PF00177) | Thermochaetoides thermophila | |
| 36 | NA (Ce) | 40S ribosomal protein S7 | polymer | 203 | 23084.7 | 1 | UniProt (G0S8C4) Pfam (PF01251) | Thermochaetoides thermophila | |
| 37 | OA (Cg) | 40S ribosomal protein s9-like protein | polymer | 190 | 22029.8 | 1 | UniProt (G0S0Z4) Pfam (PF00163) Pfam (PF01479) | Thermochaetoides thermophila | |
| 38 | PA (Ch) | 40S ribosomal protein S13-like protein | polymer | 151 | 16912.9 | 1 | UniProt (G0RZM9) Pfam (PF08069) Pfam (PF00312) | Thermochaetoides thermophila | |
| 39 | QA (Ci) | 40S ribosomal protein S14-like protein | polymer | 150 | 16071.5 | 1 | UniProt (G0SFL1) Pfam (PF00411) | Thermochaetoides thermophila | |
| 40 | RA (Cj) | 40S ribosomal protein S16-like protein | polymer | 143 | 15962.8 | 1 | UniProt (G0SBR7) Pfam (PF00380) | Thermochaetoides thermophila | |
| 41 | SA (Cm) | 40S ribosomal protein S22-like protein | polymer | 130 | 14905.5 | 1 | UniProt (G0SHI0) Pfam (PF00410) | Thermochaetoides thermophila | |
| 42 | TA (Cn) | 40S ribosomal protein s23-like protein | polymer | 145 | 15934.7 | 1 | UniProt (G0RY17) Pfam (PF00164) | Thermochaetoides thermophila | |
| 43 | UA (Co) | Small ribosomal subunit protein eS24 | polymer | 136 | 15535.3 | 1 | UniProt (P0CU28) Pfam (PF01282) | Thermochaetoides thermophila | 40S ribosomal protein S24 |
| 44 | VA (Cp) | 40S ribosomal protein S28-like protein | polymer | 68 | 7742.0 | 1 | UniProt (G0S9M9) Pfam (PF01200) | Thermochaetoides thermophila | |
| 45 | WA (CU) | Faf1 | polymer | 311 | 34576.6 | 1 | UniProt (G0S5F1) | Thermochaetoides thermophila | |
| 46 | XA (C1) | 35S rRNA | polymer | 2311 | 745189.8 | 1 | Thermochaetoides thermophila | ||
| 47 | YA (C2) | U3 snoRNA | polymer | 274 | 87969.6 | 1 | Thermochaetoides thermophila | ||
| 48 | ZA (UH) | UTP8 | polymer | 930 | 102421.1 | 1 | UniProt (P0CT47) | Thermochaetoides thermophila | |
| 49 | AB, FB (UE, UI) | Small-subunit processome Utp12 domain-containing protein | polymer | 410 | 44663.4 | 2 | UniProt (G0RYX2) Pfam (PF04003) | Thermochaetoides thermophila | |
| 50 | BB (US) | CCAAT-binding factor domain-containing protein | polymer | 549 | 63331.7 | 1 | UniProt (G0RZL4) Pfam (PF03914) | Thermochaetoides thermophila | |
| 51 | CB (Cl) | Putative ribosomal protein | polymer | 156 | 17826.7 | 1 | UniProt (G0S6J7) Pfam (PF00416) | Thermochaetoides thermophila | |
| 52 | DB (CX) | Bystin-like protein | polymer | 480 | 54319.6 | 1 | UniProt (G0S5J4) Pfam (PF05291) | Thermochaetoides thermophila | |
| 53 | EB (CY) | U3 small nucleolar ribonucleoprotein protein lcp5-like protein | polymer | 381 | 42625.4 | 1 | UniProt (G0S7Z2) Pfam (PF04000) | Thermochaetoides thermophila | |
| 54 | GB (UP) | UTP16 | polymer | 364 | 40726.0 | 1 | UniProt (G0S612) Pfam (PF08297) | Thermochaetoides thermophila | |
| 55 | HB (UX) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) | |||
| 56 | IB (CI) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 57 | JB (CI) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 58 | KB (CS) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 3880176.9 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1040.1 | |
| All* | Total formula weight | 3881217.0 |
