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9X4I

Structure of the young Killifish Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(11)
Large ribosomal subunit protein eL39polymer516426.81UniProt (A0A9D2YXB7)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L39
2B
(21)
Ubiquitin-ribosomal protein eL40 fusion proteinpolymer12814772.41UniProt (A0A1A7Z7U5)Nothobranchius furzeri (turquoise killifish)
3C
(32)
40S ribosomal protein S27polymer849508.21UniProt (A0A8C6PBA9)Nothobranchius furzeri (turquoise killifish)
4D
(41)
Large ribosomal subunit protein eL28polymer13715558.41UniProt (A0A8C6NKG9)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L28
5E
(42)
Small ribosomal subunit protein eS1polymer26630143.21UniProt (A0A1A8UD98)Nothobranchius furzeri (turquoise killifish)
6F
(51)
Small ribosomal subunit protein eS32polymer253473.51UniProt (Q6YLX4)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L41,Large ribosomal subunit protein eL41
7G
(61)
Ribosomal protein L10polymer21524699.21UniProt (A0A1A8VG34)Nothobranchius furzeri (turquoise killifish)
8H
(71)
Large ribosomal subunit protein uL5polymer17820441.81UniProt (A0A1A7ZQ07)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L11
9I
(72)
Small ribosomal subunit protein uS11polymer15116302.81UniProt (A0A1A8UGY7)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S14
10J
(81)
Large ribosomal subunit protein uL13polymer20523663.41UniProt (A0A1A8V316)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L13a
11K
(82)
40S ribosomal protein S26polymer14215669.41UniProt (A0A9D2XVU3)Nothobranchius furzeri (turquoise killifish)
12L
(91)
Large ribosomal subunit protein eL30polymer11612959.11UniProt (A0A1A8TZ47)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L30
13M
(A1)
28S rRNApolymer40241302721.61GenBank (EU780557)Nothobranchius furzeri (turquoise killifish)
14N
(A2)
40S ribosomal protein S15polymer14517041.21UniProt (A0A1A8AHB8)Nothobranchius furzeri (turquoise killifish)
15O
(B1)
Large ribosomal subunit protein uL3polymer40346187.91UniProt (A0A1A8UTD6)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L3
16P
(B2)
Small ribosomal subunit protein uS15polymer15117217.41UniProt (A0A1A8A4M8)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S13
17Q
(C1)
Ribosomal protein L4polymer37542553.41UniProt (A0A8C6NQ48)Nothobranchius furzeri (turquoise killifish)
18R
(C2)
18S rRNApolymer1838592700.51GenBank (EU780557)Nothobranchius furzeri (turquoise killifish)
19S
(D1)
Large ribosomal subunit protein eL31polymer12414356.91UniProt (A0A1A7ZQ60)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L31
20T
(E1)
60S ribosomal protein L32polymer13515832.91UniProt (A0A1A8VA16)Nothobranchius furzeri (turquoise killifish)
21U
(F1)
Large ribosomal subunit protein uL30polymer24628775.51UniProt (A0A1A8ABD9)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L7
22V
(H1)
Large ribosomal subunit protein uL29polymer12314511.51UniProt (A0A1A8B8Q0)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L35
23W
(H2)
40S ribosomal protein S21polymer839217.51UniProt (A0A1A7ZU82)Nothobranchius furzeri (turquoise killifish)
24X
(I1)
60S ribosomal protein L36polymer10512186.71UniProt (A0A1A7ZR96)Nothobranchius furzeri (turquoise killifish)
25Y
(J1)
Ribosomal protein L37polymer9711110.91UniProt (A0A1A7ZT01)Nothobranchius furzeri (turquoise killifish)
26Z
(J2)
Small ribosomal subunit protein uS5polymer27930127.01UniProt (A0A1A8UIW0)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S2
27AA
(K1)
Large ribosomal subunit protein eL38polymer708238.91UniProt (A0A1A8ABQ5)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L38
28BA
(K2)
40S ribosomal protein S8polymer20824077.21UniProt (A0A1A8V8I4)Nothobranchius furzeri (turquoise killifish)
29CA
(L1)
60S ribosomal protein L13polymer21124369.61UniProt (A0A1A8A6V0)Nothobranchius furzeri (turquoise killifish)
30DA
(L2)
Small ribosomal subunit protein uS4polymer19422585.51UniProt (A0A8C6MB21)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S9
31EA
(M1)
Large ribosomal subunit protein eL14polymer13715991.01UniProt (A0A1A8AYS1)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L14
32FA
(M2)
Small ribosomal subunit protein eS19polymer14616030.71UniProt (A0A1A8A9I2)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S19
33GA
(N1)
Ribosomal protein L15polymer20424196.31UniProt (A0A1A8UDR0)Nothobranchius furzeri (turquoise killifish)
34HA
(N2)
Small ribosomal subunit protein uS14polymer738726.31Nothobranchius furzeri (turquoise killifish)
35IA
(O1)
60S ribosomal protein L36apolymer10612565.11UniProt (A0A1A8TYD5)Nothobranchius furzeri (turquoise killifish)
36JA
(O2)
40S ribosomal protein S4polymer26329669.01UniProt (A0A1A8AV86)Nothobranchius furzeri (turquoise killifish)
37KA
(P1)
Large ribosomal subunit protein uL22polymer18421409.11UniProt (A0A1A8V1N6)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L17
38LA
(P2)
Small ribosomal subunit protein uS13polymer15217772.81UniProt (A0A1A8U9P7)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S18
39MA
(Q1)
Ribosomal protein L18polymer18821625.71UniProt (A0A1A8URP0)Nothobranchius furzeri (turquoise killifish)
40NA
(R1)
Ribosomal protein L19polymer19623494.21UniProt (A0A1A8U3R2)Nothobranchius furzeri (turquoise killifish)
41OA
(S1)
60S ribosomal protein L18apolymer17620728.51UniProt (A0A1A8UY99)Nothobranchius furzeri (turquoise killifish)
42PA
(S2)
Small ribosomal subunit protein uS9polymer14616361.21UniProt (A0A1A8A203)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S16
43QA
(T1)
Large ribosomal subunit protein eL21polymer16018677.01UniProt (A0A1A8VEW4)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L21
44RA
(T2)
40S ribosomal protein S25polymer12313856.31UniProt (A0A1A8A2D2)Nothobranchius furzeri (turquoise killifish)
45SA
(U1)
Large ribosomal subunit protein eL22polymer12914902.01UniProt (A0A9D2XXT3)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L22
46TA
(U2)
40S ribosomal protein S7polymer19422271.01UniProt (A0A8C6M2W4)Nothobranchius furzeri (turquoise killifish)
47UA
(V1)
Large ribosomal subunit protein uL14polymer14014892.51UniProt (A0A1A8U9A9)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L23
48VA
(W1)
Large ribosomal subunit protein eL24polymer15717769.01UniProt (A0A9D3BML7)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L24
49WA
(W2)
40S ribosomal protein S6polymer24928697.81UniProt (A0A1A8UHL8)Nothobranchius furzeri (turquoise killifish)
50XA
(X1)
Large ribosomal subunit protein uL23polymer15517719.21UniProt (A0A9D3BGY2)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L23a
51YA
(Y1)
Ribosomal protein L26polymer14517254.41UniProt (A0A1A8U110)Nothobranchius furzeri (turquoise killifish)
52ZA
(Y2)
Small ribosomal subunit protein uS17polymer16118586.91UniProt (A0A1A8TZX7)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S11
53AB
(Z1)
60S ribosomal protein L27polymer13615849.91UniProt (A0A1A8UQB0)Nothobranchius furzeri (turquoise killifish)
54BB
(a1)
Large ribosomal subunit protein uL2polymer25728127.91UniProt (A0A1A8AEY7)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L8
55CB
(b1)
60S ribosomal protein L29polymer647479.81UniProt (A0A8C6L745)Nothobranchius furzeri (turquoise killifish)
56DB
(d2)
Small ribosomal subunit protein eS28polymer697838.01UniProt (A0A1A8AHF9)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S28
57EB
(e1)
Large ribosomal subunit protein eL34polymer11713383.11UniProt (A0A1A7ZM90)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L34
58FB
(f1)
Large ribosomal subunit protein eL33polymer11012526.81UniProt (A0A1A8B711)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L35a
59GB
(g1)
Large ribosomal subunit protein eL43polymer9210297.31UniProt (A0A9D2YM12)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L37a
60HB
(g2)
Small ribosomal subunit protein uS2polymer31334531.71UniProt (A0A1A8AVH6)Nothobranchius furzeri (turquoise killifish)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
61IB
(h1)
Large ribosomal subunit protein uL18polymer29734154.31UniProt (A0A1A8AJY4)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L5
62JB
(i1)
5S rRNApolymer12038739.01GenBank (76360152)Nothobranchius furzeri (turquoise killifish)
63KB
(i2)
Small ribosomal subunit protein eS17polymer13415508.11UniProt (A0A1A8AN05)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S17
64LB
(j1)
5.8S rRNApolymer16151758.61GenBank (EU780557)Nothobranchius furzeri (turquoise killifish)
65MB
(k1)
Large ribosomal subunit protein uL6polymer19221789.41UniProt (A0A1A8UMU8)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L9
66NB
(l1)
Large ribosomal subunit protein eL6polymer25929592.21UniProt (A0A1A8VJ69)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L6
67OB
(m1)
60S ribosomal protein L7apolymer26630091.71UniProt (A0A1A8U664)Nothobranchius furzeri (turquoise killifish)
68PB
(m2)
40S ribosomal protein S24polymer13215299.21UniProt (A0A8C6MIM3)Nothobranchius furzeri (turquoise killifish)
69QB
(n1)
Large ribosomal subunit protein uL15polymer14816585.51UniProt (A0A1A8VKP0)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L27a
70RB
(q2)
Small ribosomal subunit protein uS10polymer11913372.71UniProt (A0A1A8AR50)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S20
71SB
(r2)
Small ribosomal subunit protein uS8polymer13014895.61UniProt (A0A8C6LFT6)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S15a
72TB
(u2)
Small ribosomal subunit protein uS7polymer20322842.41UniProt (A0A1A8UE67)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S5
73UB
(w2)
DNA-(apurinic or apyrimidinic site) lyasepolymer24727116.81UniProt (A0A1A8UXU3)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S3
74VB
(x2)
FAU ubiquitin like and ribosomal protein S30 fusion apolymer13314535.81UniProt (A0A1A8UZP9)Nothobranchius furzeri (turquoise killifish)Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
75WB
(y2)
Small ribosomal subunit protein uS12polymer14315885.71UniProt (A0A9D2XSV1)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S23
76XB
(z2)
Ribosomal protein S10polymer16618993.91UniProt (A0A1A8AVN4)Nothobranchius furzeri (turquoise killifish)
77YB
(k2)
Small ribosomal subunit protein RACK1polymer31735046.51UniProt (A0A1A8B6N7)Nothobranchius furzeri (turquoise killifish)Guanine nucleotide-binding protein subunit beta-2-like 1,Receptor of activated protein kinase C
78AC, HF, IF, JF, KF...
(82, J1, N2, O1, e1...)
ZINC IONnon-polymer65.47Chemie (ZN)
PubChem (32051)
79AD, AE, AF, BC, BD...
(A1, C2, i1)
MAGNESIUM IONnon-polymer24.385Chemie (MG)
PubChem (888)
Sequence modifications
F1: 1 - 246 (UniProt: A0A1A8ABD9)
PDBExternal DatabaseDetails
Glu 6-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains77
Total formula weight3386868.4
Non-Polymers*Number of molecules92
Total formula weight2523.8
All*Total formula weight3389392.2
*Water molecules are not included.

260626

PDB entries from 2026-10-07

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