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9X4D

Structure of the old Killifish Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(11)
Large ribosomal subunit protein eL39polymer516426.81UniProt (A0A9D2YXB7)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L39
2B
(21)
Ubiquitin-ribosomal protein eL40 fusion proteinpolymer12814772.41UniProt (A0A1A7Z7U5)Nothobranchius furzeri (turquoise killifish)
3C
(Z1)
60S ribosomal protein L27polymer13615849.91UniProt (A0A1A8UQB0)Nothobranchius furzeri (turquoise killifish)
4D
(a1)
Large ribosomal subunit protein uL2polymer25728127.91UniProt (A0A1A8AEY7)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L8
5E
(b1)
60S ribosomal protein L29polymer647479.81UniProt (A0A8C6L745)Nothobranchius furzeri (turquoise killifish)
6F
(d2)
Small ribosomal subunit protein eS28polymer697838.01UniProt (A0A1A8AHF9)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S28
7G
(e1)
Large ribosomal subunit protein eL34polymer11713383.11UniProt (A0A1A7ZM90)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L34
8H
(f1)
Large ribosomal subunit protein eL33polymer11012526.81UniProt (A0A1A8B711)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L35a
9I
(g1)
Large ribosomal subunit protein eL43polymer9210297.31UniProt (A0A9D2YM12)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L37a
10J
(g2)
Small ribosomal subunit protein uS2polymer31334531.71UniProt (A0A1A8AVH6)Nothobranchius furzeri (turquoise killifish)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
11K
(h1)
Large ribosomal subunit protein uL18polymer29734154.31UniProt (A0A1A8AJY4)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L5
12L
(i1)
5S rRNApolymer12038739.01GenBank (76360152)Nothobranchius furzeri (turquoise killifish)
13M
(j1)
5.8S rRNApolymer16151758.61GenBank (EU780557)Nothobranchius furzeri (turquoise killifish)
14N
(k1)
Large ribosomal subunit protein uL6polymer19221789.41UniProt (A0A1A8UMU8)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L9
15O
(l1)
Large ribosomal subunit protein eL6polymer25929592.21UniProt (A0A1A8VJ69)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L6
16P
(m1)
60S ribosomal protein L7apolymer26630091.71UniProt (A0A1A8U664)Nothobranchius furzeri (turquoise killifish)
17Q
(m2)
40S ribosomal protein S24polymer13215299.21UniProt (A0A8C6MIM3)Nothobranchius furzeri (turquoise killifish)
18R
(n1)
Large ribosomal subunit protein uL15polymer14816585.51UniProt (A0A1A8VKP0)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L27a
19S
(q2)
Small ribosomal subunit protein uS10polymer11913372.71UniProt (A0A1A8AR50)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S20
20T
(r2)
Small ribosomal subunit protein uS8polymer13014895.61UniProt (A0A8C6LFT6)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S15a
21U
(u2)
Small ribosomal subunit protein uS7polymer20322842.41UniProt (A0A1A8UE67)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S5
22V
(x2)
FAU ubiquitin like and ribosomal protein S30 fusion apolymer13314535.81UniProt (A0A1A8UZP9)Nothobranchius furzeri (turquoise killifish)Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed
23W
(y2)
Small ribosomal subunit protein uS12polymer14315885.71UniProt (A0A9D2XSV1)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S23
24X
(z2)
Ribosomal protein S10polymer16618993.91UniProt (A0A1A8AVN4)Nothobranchius furzeri (turquoise killifish)
25Y
(32)
40S ribosomal protein S27polymer849508.21UniProt (A0A8C6PBA9)Nothobranchius furzeri (turquoise killifish)
26Z
(41)
Large ribosomal subunit protein eL28polymer13715558.41UniProt (A0A8C6NKG9)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L28
27AA
(42)
Small ribosomal subunit protein eS1polymer26630143.21UniProt (A0A1A8UD98)Nothobranchius furzeri (turquoise killifish)
28BA
(K1)
Large ribosomal subunit protein eL38polymer708238.91UniProt (A0A1A8ABQ5)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L38
29CA
(51)
Small ribosomal subunit protein eS32polymer253473.51UniProt (Q6YLX4)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L41,Large ribosomal subunit protein eL41
30DA
(61)
Ribosomal protein L10polymer21524699.21UniProt (A0A1A8VG34)Nothobranchius furzeri (turquoise killifish)
31EA
(71)
Large ribosomal subunit protein uL5polymer17820441.81UniProt (A0A1A7ZQ07)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L11
32FA
(72)
Small ribosomal subunit protein uS11polymer15116302.81UniProt (A0A1A8UGY7)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S14
33GA
(81)
Large ribosomal subunit protein uL13polymer20523663.41UniProt (A0A1A8V316)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L13a
34HA
(82)
40S ribosomal protein S26polymer14215669.41UniProt (A0A9D2XVU3)Nothobranchius furzeri (turquoise killifish)
35IA
(91)
Large ribosomal subunit protein eL30polymer11612959.11UniProt (A0A1A8TZ47)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L30
36JA
(B1)
Large ribosomal subunit protein uL3polymer40346187.91UniProt (A0A1A8UTD6)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L3
37KA
(B2)
Small ribosomal subunit protein uS15polymer15117217.41UniProt (A0A1A8A4M8)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S13
38LA
(C1)
Ribosomal protein L4polymer37542553.41UniProt (A0A8C6NQ48)Nothobranchius furzeri (turquoise killifish)
39MA
(D1)
Large ribosomal subunit protein eL31polymer12414356.91UniProt (A0A1A7ZQ60)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L31
40NA
(E1)
60S ribosomal protein L32polymer13515832.91UniProt (A0A1A8VA16)Nothobranchius furzeri (turquoise killifish)
41OA
(F1)
Large ribosomal subunit protein uL30polymer24528646.41UniProt (A0A1A8ABD9)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L7
42PA
(H1)
Large ribosomal subunit protein uL29polymer12314511.51UniProt (A0A1A8B8Q0)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L35
43QA
(H2)
40S ribosomal protein S21polymer839217.51UniProt (A0A1A7ZU82)Nothobranchius furzeri (turquoise killifish)
44RA
(I1)
60S ribosomal protein L36polymer10512186.71UniProt (A0A1A7ZR96)Nothobranchius furzeri (turquoise killifish)
45SA
(J1)
Ribosomal protein L37polymer9711110.91UniProt (A0A1A7ZT01)Nothobranchius furzeri (turquoise killifish)
46TA
(J2)
Small ribosomal subunit protein uS5polymer27930127.01UniProt (A0A1A8UIW0)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S2
47UA
(K2)
40S ribosomal protein S8polymer20824077.21UniProt (A0A1A8V8I4)Nothobranchius furzeri (turquoise killifish)
48VA
(L1)
60S ribosomal protein L13polymer21124369.61UniProt (A0A1A8A6V0)Nothobranchius furzeri (turquoise killifish)
49WA
(L2)
Small ribosomal subunit protein uS4polymer19422585.51UniProt (A0A8C6MB21)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S9
50XA
(M1)
Large ribosomal subunit protein eL14polymer13715991.01UniProt (A0A1A8AYS1)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L14
51YA
(A2)
40S ribosomal protein S15polymer14517041.21UniProt (A0A1A8AHB8)Nothobranchius furzeri (turquoise killifish)
52ZA
(P2)
Small ribosomal subunit protein uS13polymer15217772.81UniProt (A0A1A8U9P7)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S18
53AB
(i2)
Small ribosomal subunit protein eS17polymer13415508.11UniProt (A0A1A8AN05)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S17
54BB
(w2)
DNA-(apurinic or apyrimidinic site) lyasepolymer24727116.81UniProt (A0A1A8UXU3)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S3
55CB
(A1)
28S rRNApolymer40241302721.61GenBank (EU780557.1)Nothobranchius furzeri (turquoise killifish)
56DB
(C2)
18S rRNApolymer1838592700.51GenBank (EU780557.1)Nothobranchius furzeri (turquoise killifish)
57EB
(M2)
Small ribosomal subunit protein eS19polymer14616030.71UniProt (A0A1A8A9I2)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S19
58FB
(N1)
Ribosomal protein L15polymer20424196.31UniProt (A0A1A8UDR0)Nothobranchius furzeri (turquoise killifish)
59GB
(N2)
Small ribosomal subunit protein uS14polymer738726.31Nothobranchius furzeri (turquoise killifish)
60HB
(O1)
60S ribosomal protein L36apolymer10612565.11UniProt (A0A1A8TYD5)Nothobranchius furzeri (turquoise killifish)
61IB
(O2)
40S ribosomal protein S4polymer26329669.01UniProt (A0A1A8AV86)Nothobranchius furzeri (turquoise killifish)
62JB
(P1)
Large ribosomal subunit protein uL22polymer18421409.11UniProt (A0A1A8V1N6)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L17
63KB
(Q1)
Ribosomal protein L18polymer18821625.71UniProt (A0A1A8URP0)Nothobranchius furzeri (turquoise killifish)
64LB
(R1)
Ribosomal protein L19polymer19623494.21UniProt (A0A1A8U3R2)Nothobranchius furzeri (turquoise killifish)
65MB
(S1)
60S ribosomal protein L18apolymer17620728.51UniProt (A0A1A8UY99)Nothobranchius furzeri (turquoise killifish)
66NB
(S2)
Small ribosomal subunit protein uS9polymer14616361.21UniProt (A0A1A8A203)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S16
67OB
(T1)
Large ribosomal subunit protein eL21polymer16018677.01UniProt (A0A1A8VEW4)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L21
68PB
(T2)
40S ribosomal protein S25polymer12313856.31UniProt (A0A1A8A2D2)Nothobranchius furzeri (turquoise killifish)
69QB
(U1)
Large ribosomal subunit protein eL22polymer12914902.01UniProt (A0A9D2XXT3)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L22
70RB
(U2)
40S ribosomal protein S7polymer19422271.01UniProt (A0A8C6M2W4)Nothobranchius furzeri (turquoise killifish)
71SB
(V1)
Large ribosomal subunit protein uL14polymer14014892.51UniProt (A0A1A8U9A9)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L23
72TB
(W1)
Large ribosomal subunit protein eL24polymer15717769.01UniProt (A0A9D3BML7)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L24
73UB
(W2)
40S ribosomal protein S6polymer24928697.81UniProt (A0A1A8UHL8)Nothobranchius furzeri (turquoise killifish)
74VB
(X1)
Large ribosomal subunit protein uL23polymer15517719.21UniProt (A0A9D3BGY2)Nothobranchius furzeri (turquoise killifish)60S ribosomal protein L23a
75WB
(Y1)
Ribosomal protein L26polymer14517254.41UniProt (A0A1A8U110)Nothobranchius furzeri (turquoise killifish)
76XB
(Y2)
Small ribosomal subunit protein uS17polymer16118586.91UniProt (A0A1A8TZX7)Nothobranchius furzeri (turquoise killifish)40S ribosomal protein S11
77YB
(k2)
Small ribosomal subunit protein RACK1polymer31735046.51UniProt (A0A1A8B6N7)Nothobranchius furzeri (turquoise killifish)Guanine nucleotide-binding protein subunit beta-2-like 1,Receptor of activated protein kinase C
78AC, BC, DC, EC, LF...
(e1, g1, 82, J1, N2...)
ZINC IONnon-polymer65.47Chemie (ZN)
PubChem (32051)
79AD, AE, AF, BD, BE...
(A1, C2, i1, J1)
MAGNESIUM IONnon-polymer24.385Chemie (MG)
PubChem (888)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains77
Total formula weight3386739.3
Non-Polymers*Number of molecules92
Total formula weight2523.8
All*Total formula weight3389263.1
*Water molecules are not included.

260626

PDB entries from 2026-10-07

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