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9WXP

cryo-EM structure of a mammalian collagen fibril

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DB, GD, JF
(AA, FA, KA, PA)
Collagen alpha-1(V) chainpolymer24623201.54UniProt (A0A480MJQ8)Sus scrofa (pig)
2B, EB, HD, KF
(BA, GA, LA, QA)
Fibrillar collagen NC1 domain-containing proteinpolymer23322416.54UniProt (A0A8D1DM46)Sus scrofa (pig)
3C, FB, ID, LF
(CA, HA, MA, RA)
Fibrillar collagen NC1 domain-containing proteinpolymer23421669.64UniProt (A0A8D1DM46)Sus scrofa (pig)
4D, GB, JD, MF
(DA, IA, NA, SA)
Fibrillar collagen NC1 domain-containing proteinpolymer23721587.24UniProt (A0A8D1DM80)Sus scrofa (pig)
5E, HB, KD, NF
(EA, JA, OA, TA)
Fibrillar collagen NC1 domain-containing proteinpolymer776999.54UniProt (A0A8D1DM46)Sus scrofa (pig)
6F, IB, LD, OF
(AC, FC, KC, PC)
Collagen type XI alpha 1 chainpolymer24623352.64UniProt (A0A4X1TLK6)Sus scrofa (pig)
7G, JB, MD, PF
(BC, GC, LC, QC)
Collagen type XI alpha 1 chainpolymer23322244.24UniProt (A0A5G2RGP6)Sus scrofa (pig)
8H, KB, ND, QF
(CC, HC, MC, RC)
Collagen type XI alpha 1 chainpolymer23521615.34UniProt (A0A4X1TLK6)Sus scrofa (pig)
9I, LB, OD, RF
(DC, IC, NC, SC)
Fibrillar collagen NC1 domain-containing proteinpolymer23621355.84UniProt (A0A8D1N6J3)Sus scrofa (pig)
10J, MB, PD, SF
(EC, JC, OC, TC)
Fibrillar collagen NC1 domain-containing proteinpolymer766852.44UniProt (A0A8D1N6J3)Sus scrofa (pig)
11K, NB, QD, TF
(AB, FB, KB, PB)
Chromaffin granule amine transporter isoform X1polymer23121432.74UniProt (A0A480YT77)Sus scrofa (pig)Collagen alpha-2(V) chain preproprotein
12L, OB, RD, UF
(BB, GB, LB, QB)
Collagen type V alpha 2 chainpolymer23321671.64UniProt (A0A8D0XPB4)Sus scrofa (pig)
13M, PB, SD, VF
(CB, HB, MB, RB)
Collagen type V alpha 2 chainpolymer23421379.94UniProt (A0A4X1TRM1)Sus scrofa (pig)
14N, QB, TD, WF
(DB, IB, NB, SB)
Collagen alpha-2(V) chain preproproteinpolymer23722060.94UniProt (F1RXW0)Sus scrofa (pig)Collagen type V alpha 2 chain
15O, RB, UD, XF
(EB, JB, OB, TB)
Collagen alpha-2(V) chain preproproteinpolymer766758.44UniProt (F1RXW0)Sus scrofa (pig)Collagen type V alpha 2 chain
16AG, EA, FA, GA, HC...
(AD, AE, AF, AG, AH...)
Collagen type II alpha 1 chainpolymer16915503.124UniProt (A0A8D1U0L9)Sus scrofa (pig)
17AE, BG, CG, DG, HA...
(BD, BE, BF, BG, BH...)
Collagen type II alpha 1 chainpolymer24822314.224UniProt (A0A8D1U0L9)Sus scrofa (pig)
18AC, BE, CE, DE, EG...
(CD, CE, CF, CG, CH...)
Collagen type II alpha 1 chainpolymer22320160.924UniProt (A0A8D1VPS8)Sus scrofa (pig)
19AA, BC, CC, DC, EE...
(DD, DE, DF, DG, DH...)
Collagen type II alpha 1 chainpolymer23721328.824UniProt (A0A8D1U0L9)Sus scrofa (pig)
20AH, BA, BH, CA, DA...
(ED, EE, EF, EG, EH...)
Collagen type II alpha 1 chainpolymer16214454.724UniProt (A0A8D1U0L9)Sus scrofa (pig)
21CH, TA, WC, ZE
(AJ, DJ, GJ, JJ)
Collagen type IX alpha 1 chainpolymer585459.94UniProt (A0A8X9AEQ8)Sus scrofa (pig)
22AF, DH, UA, XC
(BJ, EJ, HJ, KJ)
Collagen alpha-1(IX) chainpolymer23121571.94UniProt (A0A8D0XSJ2)Sus scrofa (pig)
23BF, EH, VA, YC
(CJ, FJ, IJ, LJ)
Collagen alpha-1(IX) chainpolymer17116613.84UniProt (A0A8D1PQ72)Sus scrofa (pig)
24CF, FH, WA, ZC
(AK, DK, GK, JK)
Collagen type IX alpha 2 chainpolymer585337.04UniProt (A0A8D0V1I3)Sus scrofa (pig)
25AD, DF, GH, XA
(BK, EK, HK, KK)
Collagen type IX alpha 2 chainpolymer23221813.74UniProt (A0A4X1VU67)Sus scrofa (pig)
26BD, EF, HH, YA
(CK, FK, IK, LK)
Collagen type IX alpha 2 chainpolymer17016682.04UniProt (A0A4X1VU67)Sus scrofa (pig)
27CD, FF, IH, ZA
(AL, DL, GL, JL)
Collagen alpha-3(IX) chainpolymer585475.24UniProt (A0A8D1N974)Sus scrofa (pig)
28AB, DD, GF, JH
(BL, EL, HL, KL)
Collagen alpha-3(IX) chainpolymer23221485.54UniProt (A0A4X1SJL5)Sus scrofa (pig)
29BB, ED, HF, KH
(CL, FL, IL, LL)
Collagen alpha-3(IX) chainpolymer17016272.94UniProt (A0A8D1N974)Sus scrofa (pig)
30CB, FD, IF, LH
(AM, BM, CM, DM)
Opticinpolymer21023674.34UniProt (A0A8D0IR51)Sus scrofa (pig)
31AI, AJ, AK, AL, AM...
(Qa, De, Li, ri, fb...)
alpha-D-glucopyranose-(1-2)-beta-D-galactopyranosebranched342.3372In PDB
GlyTouCan (G50348ER)
32AW, UV, WV, YV
(RC, CC, HC, MC)
alpha-D-glucopyranosenon-polymer180.24Chemie (GLC)
PubChem (79025)
33BW, VV, XV, ZV
(PB, AB, FB, KB)
beta-D-galactopyranosenon-polymer180.24Chemie (GAL)
Sequence modifications
BJ, EJ, HJ, KJ: 259 - 489 (UniProt: A0A8D0XSJ2)
PDBExternal DatabaseDetails
-Pro 576deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains220
Total formula weight4006214.9
BranchedNumber of molecules372
Total formula weight127334.5
Non-Polymers*Number of molecules8
Total formula weight1441.2
All*Total formula weight4134990.7
*Water molecules are not included.

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PDB entries from 2026-08-05

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