9WSL
CryoEM structure of Western equine encephalitis virus California VLP in complex with VLDLR-LBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G (A, C, E) | Spike glycoprotein E1 | polymer | 439 | 47390.9 | 3 | UniProt (P13897) Pfam (PF01589) | Western equine encephalitis virus | E1 envelope glycoprotein |
| 2 | B, E, H (B, D, F) | Spike glycoprotein E2 | polymer | 418 | 46534.1 | 3 | UniProt (P13897) Pfam (PF00943) | Western equine encephalitis virus | E2 envelope glycoprotein |
| 3 | C, F, I (R, S, T) | Very low-density lipoprotein receptor | polymer | 79 | 8783.6 | 3 | UniProt (P98155) Pfam (PF00057) | Homo sapiens (human) | VLDL receptor,VLDL-R |
| 4 | J, K, L, M, N... (R, S, T) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) |
Sequence modifications
A, C, E: 1 - 439 (UniProt: P13897)
B, D, F: 1 - 418 (UniProt: P13897)
| PDB | External Database | Details |
|---|---|---|
| Lys 50 | Arg 847 | conflict |
| Tyr 209 | Asp 1006 | conflict |
| Thr 349 | Val 1146 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Tyr 69 | Phe 388 | conflict |
| Glu 81 | Asp 400 | conflict |
| Leu 150 | Val 469 | conflict |
| Ile 154 | Val 473 | conflict |
| Lys 181 | Glu 500 | conflict |
| Gln 214 | Arg 533 | conflict |
| Arg 224 | Lys 543 | conflict |
| Thr 230 | Lys 549 | conflict |
| Arg 231 | Ser 550 | conflict |
| Arg 267 | Pro 586 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 308125.6 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 240.5 | |
| All* | Total formula weight | 308366.1 |
