9W2M
Cryo-EM structure of the Cytoplasmic lattice(CPL) from mouse oocyte
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, AB, BA, BB... (1, Z, z, 2, 3...) | Inactive protein-arginine deiminase type-6 | polymer | 682 | 76854.1 | 20 | UniProt (Q8K3V4) | Mus musculus (house mouse) | Arginine deiminase-like protein,Egg and embryo abundant PAD,ePAD,P75,Peptidylarginine deiminase VI,Protein-arginine deiminase type VI,Protein-arginine deiminase type-6 |
| 2 | B, E, M, P (C, H, c, h) | Oocyte-expressed protein homolog | polymer | 125 | 14294.6 | 4 | UniProt (Q9CWE6) | Mus musculus (house mouse) | Factor located in oocytes permitting embryonic development,Floped,Oocyte- and embryo-specific protein 19,mOEP19,STAT3 downstream gene and differentiation regulator |
| 3 | C, N (D, d) | KH domain-containing protein 3 | polymer | 128 | 15251.0 | 2 | UniProt (Q9CWU5) | Mus musculus (house mouse) | Protein Filia |
| 4 | D, F, O, Q (E, I, e, i) | NLR family, pyrin domain containing 4F | polymer | 933 | 107564.8 | 4 | UniProt (L7N1W9) | Mus musculus (house mouse) | |
| 5 | G, R (J, j) | FBXW24 | polymer | 466 | 53469.1 | 2 | Mus musculus (house mouse) | ||
| 6 | H, S (K, k) | S-phase kinase-associated protein 1 | polymer | 163 | 18694.0 | 2 | UniProt (Q9WTX5) | Mus musculus (house mouse) | Cyclin-A/CDK2-associated protein p19,S-phase kinase-associated protein 1A,p19A,p19skp1 |
| 7 | I, T (O, o) | Ubiquitin-conjugating enzyme E2 D3 | polymer | 147 | 16706.1 | 2 | UniProt (P61079) | Mus musculus (house mouse) | (E3-independent) E2 ubiquitin-conjugating enzyme D3,E2 ubiquitin-conjugating enzyme D3,Ubiquitin carrier protein D3,Ubiquitin-conjugating enzyme E2(17)KB 3,Ubiquitin-conjugating enzyme E2-17 kDa 3,Ubiquitin-protein ligase D3 |
| 8 | HA, J, PA, U (Q, q, P, p) | E3 ubiquitin-protein ligase UHRF1 | polymer | 782 | 88436.8 | 4 | UniProt (Q8VDF2) | Mus musculus (house mouse) | Nuclear protein 95,Nuclear zinc finger protein Np95,RING-type E3 ubiquitin transferase UHRF1,Ubiquitin-like PHD and RING finger domain-containing protein 1,mUhrf1,Ubiquitin-like-containing PHD and RING finger domains protein 1 |
| 9 | K, V (R, r) | Zinc finger BED domain-containing protein 3 | polymer | 55 | 6370.3 | 2 | UniProt (Q9D0L1) | Mus musculus (house mouse) | Axin-interacting protein |
| 10 | GA, OA (N, n) | NACHT, LRR and PYD domains-containing protein 14 | polymer | 966 | 110369.0 | 2 | UniProt (Q6B966) | Mus musculus (house mouse) | NALP-iota,Germ cell specific leucine-rich repeat NTPase |
| 11 | IA, QA (L, l) | Tubulin beta-2A chain | polymer | 445 | 49953.8 | 2 | UniProt (Q7TMM9) | Mus musculus (house mouse) | |
| 12 | JA, RA (M, m) | Tubulin beta-2B chain | polymer | 445 | 49999.9 | 2 | UniProt (Q9CWF2) | Mus musculus (house mouse) | |
| 13 | KA, MA, SA, UA (A, F, a, f) | Isoform 4 of NACHT, LRR and PYD domains-containing protein 5 | polymer | 963 | 109296.8 | 4 | UniProt (Q9R1M5) | Mus musculus (house mouse) | Maternal antigen that embryos require,Mater protein,Ooplasm-specific protein 1,OP1 |
| 14 | LA, NA, TA, VA (B, G, b, g) | Transducin-like enhancer protein 6 | polymer | 436 | 49005.3 | 4 | UniProt (Q9WVB3) | Mus musculus (house mouse) | Groucho-related protein 6 |
| 15 | EB, FB, IB, JB (L, M, l, m) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 4 | Chemie (GDP) | |||
| 16 | GB, HB, KB, LB (A, F, a, f) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 4 | Chemie (ADP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 3653101.4 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 3481.6 | |
| All* | Total formula weight | 3656583.0 |
