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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9VTJ

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 60S and cycloheximide (CHX)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(LA)		Ribosomal proteinpolymer21724778.41UniProt (A0A1S3Y379)Nicotiana benthamiana
2B
(LB)		60S ribosomal protein L8-likepolymer26028220.71UniProt (A0A1S3XXQ5)Nicotiana benthamiana
3C
(LC)		60S ribosomal protein L3polymer38944552.31UniProt (A0A1S3ZLI9)Nicotiana benthamiana
4D
(LD)		60S ribosomal protein L4-likepolymer40544778.91UniProt (A0A1S4BWA4)Nicotiana benthamiana
5E
(LE)		60S ribosomal protein L11-1polymer18120794.21UniProt (A0A1S3XAW1)Nicotiana benthamiana
6F
(LF)		60S ribosomal protein L9-1polymer19422058.71UniProt (A0A1S4CJ62)Nicotiana benthamiana
7G
(LG)		60S ribosomal protein L13a-4polymer20623583.21UniProt (A0A1S3Z662)Nicotiana benthamiana
8H
(LH)		60S ribosomal protein L23polymer14015040.91UniProt (A0A1S3XSQ1)Nicotiana benthamianaLarge ribosomal subunit protein uL14
9I
(LI)		60s ribosomal protein l27a-3polymer14816504.31UniProt (A0A1J6IJF4)Nicotiana benthamiana
10J
(LJ)		60S ribosomal protein L10polymer21924841.31UniProt (A0A1S3Z2D7)Nicotiana benthamiana
11K
(LK)		60S ribosomal protein L5-likepolymer29333691.61UniProt (A0A1S3XE16)Nicotiana benthamiana
12L
(LL)		60S ribosomal protein L17-1 isoform X2polymer17519906.91UniProt (A0A1S4DQP0)Nicotiana benthamiana
13M
(LM)		Large ribosomal subunit protein uL23polymer15417355.51UniProt (Q07761)Nicotiana benthamiana60S ribosomal protein L23a,L25
14N
(LN)		60S ribosomal protein L26-1polymer14616808.61UniProt (A0A1S4CC07)Nicotiana benthamiana
15O
(LO)		60S ribosomal protein L35-likepolymer12314324.41UniProt (A0A1S3WY31)Nicotiana benthamiana
16P
(LP)		60S ribosomal protein L7-4-likepolymer24228147.91UniProt (A0A1U7X2X8)Nicotiana benthamiana
17Q
(LQ)		60S ribosomal protein L6-like isoform X1polymer23025493.31UniProt (A0A1U7WD54)Nicotiana benthamiana
18R
(LR)		60S ribosomal protein L7apolymer23727223.51UniProt (A0A1U7XNI3)Nicotiana benthamiana
19S
(LS)		60S ribosomal protein L13polymer20022862.71UniProt (A0A1S4CSN1)Nicotiana benthamiana
20T
(LT)		60S ribosomal protein L14-1polymer13015027.01UniProt (A0A1U7UYX7)Nicotiana benthamiana
21U
(LU)		Ribosomal protein L15polymer20424226.31UniProt (A0A1S3XIA7)Nicotiana benthamiana
22V
(LV)		60S ribosomal protein L18-2polymer18720905.81UniProt (A0A1S4DF55)Nicotiana benthamiana
23W
(LW)		Ribosomal protein L19polymer21124742.31UniProt (A0A1S4A7M5)Nicotiana benthamiana
24X
(LX)		60S ribosomal protein L18apolymer17821513.31UniProt (A0A1U7V5H1)Nicotiana benthamiana
25Y
(LY)		60S ribosomal protein L21-1-likepolymer16418716.91UniProt (A0A1S3XCW6)Nicotiana benthamiana
26Z
(LZ)		Large ribosomal subunit protein eL22polymer10812506.31UniProt (A0A1S4BSU3)Nicotiana benthamiana60S ribosomal protein L22
27AA
(La)		60S ribosomal protein L24polymer16418606.01UniProt (A0A1S4BHF2)Nicotiana benthamiana
28BA
(Lb)		60S ribosomal protein L27polymer13515692.71UniProt (A0A1S3XBV7)Nicotiana benthamiana
29CA
(Lc)		60S ribosomal protein L28-1-likepolymer14315987.71UniProt (A0A1U7WYY1)Nicotiana benthamiana
30DA
(Ld)		60S ribosomal protein L29polymer505914.71Nicotiana benthamiana
31EA
(Le)		60S ribosomal protein L30polymer11312420.51UniProt (A0A1S3WZ09)Nicotiana benthamiana
32FA
(Lf)		60S ribosomal protein L31polymer12013894.21UniProt (A0A1S3Y3V5)Nicotiana benthamiana
33GA
(Lg)		60S ribosomal protein L32-1polymer13315637.51UniProt (A0A1U7YAK1)Nicotiana benthamiana
34HA
(Lh)		60S ribosomal protein L35a-3-likepolymer11212959.21UniProt (A0A1S4AHL7)Nicotiana benthamiana
35IA
(Li)		Large ribosomal subunit protein eL34polymer12013788.41UniProt (P41098)Nicotiana benthamiana60S ribosomal protein L34
36JA
(Lj)		60S ribosomal protein L36polymer11012389.91UniProt (A0A1U7VXX3)Nicotiana benthamiana
37KA
(Lk)		Ribosomal protein L37polymer9510879.81UniProt (A0A1S4DN51)Nicotiana benthamiana
38LA
(Ll)		60S ribosomal protein L38polymer698101.71UniProt (A0A1S4C4G8)Nicotiana benthamiana
39MA
(Lm)		60S ribosomal protein L39-3polymer516503.81UniProt (A0A1U7Y1K3)Nicotiana benthamiana
40NA
(Ln)		Ubiquitin-60S ribosomal protein L40polymer12814703.41UniProt (A0A1U7X7W2)Nicotiana benthamiana
41OA
(Lp)		60S ribosomal protein L44polymer10511991.31UniProt (A0A1U7YPT7)Nicotiana benthamiana
42PA
(Lq)		60S ribosomal protein L37apolymer778624.21UniProt (A0A1U7XSD1)Nicotiana benthamiana
43QA
(10)		RNA (204-MER)polymer20465633.81synthetic construct
44RA
(12)		5S rRNApolymer11938328.81Nicotiana benthamiana
45SA
(13)		5.8S rRNApolymer16352534.21Nicotiana benthamiana
46TA
(14)		25S rRNApolymer33901097118.11Nicotiana benthamiana
Sequence modifications
LA: 1 - 217 (UniProt: A0A1S3Y379)
PDBExternal DatabaseDetails
Ser 2-insertion
Ile 216Val 215conflict
LC: 1 - 389 (UniProt: A0A1S3ZLI9)
PDBExternal DatabaseDetails
Ser 200Gly 200conflict
Glu 308Asp 308conflict
Glu 381Gln 381conflict
LD: 1 - 405 (UniProt: A0A1S4BWA4)
PDBExternal DatabaseDetails
Val 27Leu 27conflict
LF: 1 - 194 (UniProt: A0A1S4CJ62)
PDBExternal DatabaseDetails
Lys 125Arg 125conflict
Val 191Ala 191conflict
LI: 1 - 148 (UniProt: A0A1J6IJF4)
PDBExternal DatabaseDetails
Ser 94Asn 94conflict
LK: 1 - 293 (UniProt: A0A1S3XE16)
PDBExternal DatabaseDetails
Arg 85Gln 85conflict
Thr 126Ser 126conflict
Val 150Ile 150conflict
Phe 218Tyr 218conflict
LL: 1 - 175 (UniProt: A0A1S4DQP0)
PDBExternal DatabaseDetails
Lys 46Arg 46conflict
Ser 168Pro 168conflict
LM: 1 - 154 (UniProt: Q07761)
PDBExternal DatabaseDetails
Phe 31Leu 31conflict
LO: 1 - 123 (UniProt: A0A1S3WY31)
PDBExternal DatabaseDetails
Ala 100Val 100conflict
LP: 1 - 242 (UniProt: A0A1U7X2X8)
PDBExternal DatabaseDetails
Pro 7Leu 7conflict
Arg 64Gln 64conflict
Asp 157Glu 157conflict
LQ: 1 - 230 (UniProt: A0A1U7WD54)
PDBExternal DatabaseDetails
Ile 60Phe 60conflict
Lys 97Arg 97conflict
Val 144Ile 144conflict
Ser 148Asn 148conflict
Phe 152Ile 152conflict
Glu 187Gly 187conflict
LR: 22 - 258 (UniProt: A0A1U7XNI3)
PDBExternal DatabaseDetails
Ile 108Val 108conflict
Lys 110Arg 110conflict
LS: 1 - 200 (UniProt: A0A1S4CSN1)
PDBExternal DatabaseDetails
Val 139Ala 139conflict
Glu 163Asp 163conflict
LT: 1 - 130 (UniProt: A0A1U7UYX7)
PDBExternal DatabaseDetails
Thr 82Asn 82conflict
Asn 86Ser 86conflict
Ala 101Ser 101conflict
LW: 1 - 211 (UniProt: A0A1S4A7M5)
PDBExternal DatabaseDetails
Val 190Ala 190conflict
Ser 195Pro 195conflict
Thr 197Ala 197conflict
Pro 198Ser 198conflict
LZ: 20 - 127 (UniProt: A0A1S4BSU3)
PDBExternal DatabaseDetails
Ala 61Thr 61conflict
Ala 63Thr 63conflict
Lc: 1 - 143 (UniProt: A0A1U7WYY1)
PDBExternal DatabaseDetails
Tyr 53Asn 53conflict
Ala 98Thr 98conflict
Lg: 1 - 133 (UniProt: A0A1U7YAK1)
PDBExternal DatabaseDetails
Thr 9Lys 9conflict
Lh: 1 - 112 (UniProt: A0A1S4AHL7)
PDBExternal DatabaseDetails
Val 57Ile 57conflict
Lys 91Asn 91conflict
Lj: 1 - 110 (UniProt: A0A1U7VXX3)
PDBExternal DatabaseDetails
Ser 45Gly 45conflict
Lp: 1 - 105 (UniProt: A0A1U7YPT7)
PDBExternal DatabaseDetails
Gly 17Cys 17conflict
Lq: 1 - 77 (UniProt: A0A1U7XSD1)
PDBExternal DatabaseDetails
Thr 8Ala 8conflict
Asn 35Ser 35conflict
Tyr 59Asp 59conflict
Asn 62Lys 62conflict
Val 65Ala 65conflict
Asp 76Ala 76conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight2060315.0
All*Total formula weight2060315.0
*Water molecules are not included.

256448

PDB entries from 2026-07-15

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