Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9VTG

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 60S

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (LA)	Ribosomal protein	polymer	217	24778.4	1	UniProt (A0A1S3Y379)	Nicotiana benthamiana
2	B (LB)	60S ribosomal protein L8-like	polymer	260	28220.7	1	UniProt (A0A1S3XXQ5)	Nicotiana benthamiana
3	C (LC)	60S ribosomal protein L3	polymer	389	44552.3	1	UniProt (A0A1S3ZLI9)	Nicotiana benthamiana
4	D (LD)	60S ribosomal protein L4-like	polymer	405	44778.9	1	UniProt (A0A1S4BWA4)	Nicotiana benthamiana
5	E (LE)	60S ribosomal protein L11-1	polymer	181	20794.2	1	UniProt (A0A1S3XAW1)	Nicotiana benthamiana
6	F (LF)	60S ribosomal protein L9-1	polymer	194	22058.7	1	UniProt (A0A1S4CJ62)	Nicotiana benthamiana
7	G (LG)	60S ribosomal protein L13a-4	polymer	206	23583.2	1	UniProt (A0A1S3Z662)	Nicotiana benthamiana
8	H (LH)	60S ribosomal protein L23	polymer	140	15040.9	1	UniProt (A0A1S3XSQ1)	Nicotiana benthamiana	Large ribosomal subunit protein uL14
9	I (LI)	60s ribosomal protein l27a-3	polymer	148	16504.3	1	UniProt (A0A1J6IJF4)	Nicotiana benthamiana
10	J (LJ)	60S ribosomal protein L10	polymer	219	24841.3	1	UniProt (A0A1S3Z2D7)	Nicotiana benthamiana
11	K (LK)	60S ribosomal protein L5-like	polymer	293	33691.6	1	UniProt (A0A1S3XE16)	Nicotiana benthamiana
12	L (LL)	60S ribosomal protein L17-1 isoform X2	polymer	175	19906.9	1	UniProt (A0A1S4DQP0)	Nicotiana benthamiana
13	M (LM)	Large ribosomal subunit protein uL23	polymer	154	17355.5	1	UniProt (Q07761)	Nicotiana benthamiana	60S ribosomal protein L23a,L25
14	N (LN)	60S ribosomal protein L26-1	polymer	146	16808.6	1	UniProt (A0A1S4CC07)	Nicotiana benthamiana
15	O (LO)	60S ribosomal protein L35-like	polymer	123	14324.4	1	UniProt (A0A1S3WY31)	Nicotiana benthamiana
16	P (LP)	60S ribosomal protein L7-4-like	polymer	242	28147.9	1	UniProt (A0A1U7X2X8)	Nicotiana benthamiana
17	Q (LQ)	60S ribosomal protein L6-like isoform X1	polymer	230	25493.3	1	UniProt (A0A1U7WD54)	Nicotiana benthamiana
18	R (LR)	60S ribosomal protein L7a	polymer	237	27223.5	1	UniProt (A0A1U7XNI3)	Nicotiana benthamiana
19	S (LS)	60S ribosomal protein L13	polymer	200	22862.7	1	UniProt (A0A1S4CSN1)	Nicotiana benthamiana
20	T (LT)	60S ribosomal protein L14-1	polymer	130	15027.0	1	UniProt (A0A1U7UYX7)	Nicotiana benthamiana
21	U (LU)	Ribosomal protein L15	polymer	204	24226.3	1	UniProt (A0A1S3XIA7)	Nicotiana benthamiana
22	V (LV)	60S ribosomal protein L18-2	polymer	187	20905.8	1	UniProt (A0A1S4DF55)	Nicotiana benthamiana
23	W (LW)	Ribosomal protein L19	polymer	211	24742.3	1	UniProt (A0A1S4A7M5)	Nicotiana benthamiana
24	X (LX)	60S ribosomal protein L18a	polymer	178	21513.3	1	UniProt (A0A1U7V5H1)	Nicotiana benthamiana
25	Y (LY)	60S ribosomal protein L21-1-like	polymer	164	18716.9	1	UniProt (A0A1S3XCW6)	Nicotiana benthamiana
26	Z (LZ)	Large ribosomal subunit protein eL22	polymer	108	12506.3	1	UniProt (A0A1S4BSU3)	Nicotiana benthamiana	60S ribosomal protein L22
27	AA (La)	60S ribosomal protein L24	polymer	164	18606.0	1	UniProt (A0A1S4BHF2)	Nicotiana benthamiana
28	BA (Lb)	60S ribosomal protein L27	polymer	135	15692.7	1	UniProt (A0A1S3XBV7)	Nicotiana benthamiana
29	CA (Lc)	60S ribosomal protein L28-1-like	polymer	143	15987.7	1	UniProt (A0A1U7WYY1)	Nicotiana benthamiana
30	DA (Ld)	60S ribosomal protein L29	polymer	50	5914.7	1		Nicotiana benthamiana
31	EA (Le)	60S ribosomal protein L30	polymer	113	12420.5	1	UniProt (A0A1S3WZ09)	Nicotiana benthamiana
32	FA (Lf)	60S ribosomal protein L31	polymer	120	13894.2	1	UniProt (A0A1S3Y3V5)	Nicotiana benthamiana
33	GA (Lg)	60S ribosomal protein L32-1	polymer	133	15637.5	1	UniProt (A0A1U7YAK1)	Nicotiana benthamiana
34	HA (Lh)	60S ribosomal protein L35a-3-like	polymer	112	12959.2	1	UniProt (A0A1S4AHL7)	Nicotiana benthamiana
35	IA (Li)	Large ribosomal subunit protein eL34	polymer	120	13788.4	1	UniProt (P41098)	Nicotiana benthamiana	60S ribosomal protein L34
36	JA (Lj)	60S ribosomal protein L36	polymer	110	12389.9	1	UniProt (A0A1U7VXX3)	Nicotiana benthamiana
37	KA (Lk)	Ribosomal protein L37	polymer	95	10879.8	1	UniProt (A0A1S4DN51)	Nicotiana benthamiana
38	LA (Ll)	60S ribosomal protein L38	polymer	69	8101.7	1	UniProt (A0A1S4C4G8)	Nicotiana benthamiana
39	MA (Lm)	60S ribosomal protein L39-3	polymer	51	6503.8	1	UniProt (A0A1U7Y1K3)	Nicotiana benthamiana
40	NA (Ln)	Ubiquitin-60S ribosomal protein L40	polymer	128	14703.4	1	UniProt (A0A1U7X7W2)	Nicotiana benthamiana
41	OA (Lp)	60S ribosomal protein L44	polymer	105	11991.3	1	UniProt (A0A1U7YPT7)	Nicotiana benthamiana
42	PA (Lq)	60S ribosomal protein L37a	polymer	77	8624.2	1	UniProt (A0A1U7XSD1)	Nicotiana benthamiana
43	QA (10)	RNA (204-MER)	polymer	204	65633.8	1		synthetic construct
44	RA (12)	5S rRNA	polymer	119	38328.8	1	GenBank (2501293102)	Nicotiana benthamiana
45	SA (13)	5.8S rRNA	polymer	163	52534.2	1		Nicotiana benthamiana
46	TA (14)	25S rRNA	polymer	3390	1097118.1	1		Nicotiana benthamiana

Sequence modifications

LA: 1 - 217 (UniProt: A0A1S3Y379)

PDB	External Database	Details
Ser 2	-	insertion
Ile 216	Val 215	conflict

LC: 1 - 389 (UniProt: A0A1S3ZLI9)

PDB	External Database	Details
Ser 200	Gly 200	conflict
Glu 308	Asp 308	conflict
Glu 381	Gln 381	conflict

LD: 1 - 405 (UniProt: A0A1S4BWA4)

PDB	External Database	Details
Val 27	Leu 27	conflict

LF: 1 - 194 (UniProt: A0A1S4CJ62)

PDB	External Database	Details
Lys 125	Arg 125	conflict
Val 191	Ala 191	conflict

LI: 1 - 148 (UniProt: A0A1J6IJF4)

PDB	External Database	Details
Ser 94	Asn 94	conflict

LK: 1 - 293 (UniProt: A0A1S3XE16)

PDB	External Database	Details
Arg 85	Gln 85	conflict
Thr 126	Ser 126	conflict
Val 150	Ile 150	conflict
Phe 218	Tyr 218	conflict

LL: 1 - 175 (UniProt: A0A1S4DQP0)

PDB	External Database	Details
Lys 46	Arg 46	conflict
Ser 168	Pro 168	conflict

LM: 1 - 154 (UniProt: Q07761)

PDB	External Database	Details
Phe 31	Leu 31	conflict

LO: 1 - 123 (UniProt: A0A1S3WY31)

PDB	External Database	Details
Ala 100	Val 100	conflict

LP: 1 - 242 (UniProt: A0A1U7X2X8)

PDB	External Database	Details
Pro 7	Leu 7	conflict
Arg 64	Gln 64	conflict
Asp 157	Glu 157	conflict

LQ: 1 - 230 (UniProt: A0A1U7WD54)

PDB	External Database	Details
Ile 60	Phe 60	conflict
Lys 97	Arg 97	conflict
Val 144	Ile 144	conflict
Ser 148	Asn 148	conflict
Phe 152	Ile 152	conflict
Glu 187	Gly 187	conflict

LR: 22 - 258 (UniProt: A0A1U7XNI3)

PDB	External Database	Details
Ile 108	Val 108	conflict
Lys 110	Arg 110	conflict

LS: 1 - 200 (UniProt: A0A1S4CSN1)

PDB	External Database	Details
Val 139	Ala 139	conflict
Glu 163	Asp 163	conflict

LT: 1 - 130 (UniProt: A0A1U7UYX7)

PDB	External Database	Details
Thr 82	Asn 82	conflict
Asn 86	Ser 86	conflict
Ala 101	Ser 101	conflict

LW: 1 - 211 (UniProt: A0A1S4A7M5)

PDB	External Database	Details
Val 190	Ala 190	conflict
Ser 195	Pro 195	conflict
Thr 197	Ala 197	conflict
Pro 198	Ser 198	conflict

LZ: 20 - 127 (UniProt: A0A1S4BSU3)

PDB	External Database	Details
Ala 61	Thr 61	conflict
Ala 63	Thr 63	conflict

Lc: 1 - 143 (UniProt: A0A1U7WYY1)

PDB	External Database	Details
Tyr 53	Asn 53	conflict
Ala 98	Thr 98	conflict

Lg: 1 - 133 (UniProt: A0A1U7YAK1)

PDB	External Database	Details
Thr 9	Lys 9	conflict

Lh: 1 - 112 (UniProt: A0A1S4AHL7)

PDB	External Database	Details
Val 57	Ile 57	conflict
Lys 91	Asn 91	conflict

Lj: 1 - 110 (UniProt: A0A1U7VXX3)

PDB	External Database	Details
Ser 45	Gly 45	conflict

Lp: 1 - 105 (UniProt: A0A1U7YPT7)

PDB	External Database	Details
Gly 17	Cys 17	conflict

Lq: 1 - 77 (UniProt: A0A1U7XSD1)

PDB	External Database	Details
Thr 8	Ala 8	conflict
Asn 35	Ser 35	conflict
Tyr 59	Asp 59	conflict
Asn 62	Lys 62	conflict
Val 65	Ala 65	conflict
Asp 76	Ala 76	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	46
Polymers	Total formula weight	2060315.0
All*	Total formula weight	2060315.0

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)