9VR3
Trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA containing G opposite the crosslink
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | DNA (5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*G)-3') | polymer | 13 | 3863.5 | 1 | synthetic construct | ||
| 2 | B (B) | DNA (5'-D(P*GP*CP*TP*TP*CP*GP*TP*CP*CP*TP*GP*G)-3') | polymer | 13 | 3974.6 | 1 | synthetic construct | ||
| 3 | C (A) | Endonuclease 8 | polymer | 262 | 29815.0 | 1 | UniProt (A0A024L4H5) | Escherichia coli BL21 | DNA glycosylase/AP lyase Nei,DNA-(apurinic or apyrimidinic site) lyase Nei,Endonuclease VIII |
| 4 | D, E, F, G (A) | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
| 5 | H (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) | |||
| 6 | I, J, K (C, B, A) | water | water | 18.0 | 274 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 37653.1 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 449.7 | |
| All* | Total formula weight | 38102.8 |
