9VCF
Cryo-EM structure of Shewanella putrefaciens ComEC in complex with dsDNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA internalization-related competence protein ComEC/Rec2 | polymer | 837 | 93053.6 | 1 | UniProt (A4Y5P8) | Shewanella putrefaciens | |
| 2 | B (B) | DNA (30-MER) | polymer | 30 | 9178.0 | 1 | synthetic construct | ||
| 3 | C (C) | DNA (30-MER) | polymer | 30 | 9266.0 | 1 | synthetic construct | ||
| 4 | D (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) |
Sequence modifications
A: 1 - 774 (UniProt: A4Y5P8)
| PDB | External Database | Details |
|---|---|---|
| Met -34 | - | initiating methionine |
| Gly -33 | - | expression tag |
| His -32 | - | expression tag |
| His -31 | - | expression tag |
| His -30 | - | expression tag |
| His -29 | - | expression tag |
| His -28 | - | expression tag |
| His -27 | - | expression tag |
| His -26 | - | expression tag |
| His -25 | - | expression tag |
| His -24 | - | expression tag |
| His -23 | - | expression tag |
| Ser -22 | - | expression tag |
| Ser -21 | - | expression tag |
| Gly -20 | - | expression tag |
| Leu -19 | - | expression tag |
| Glu -18 | - | expression tag |
| Val -17 | - | expression tag |
| Leu -16 | - | expression tag |
| Phe -15 | - | expression tag |
| Gln -14 | - | expression tag |
| Gly -13 | - | expression tag |
| Pro -12 | - | expression tag |
| Gly -11 | - | expression tag |
| Gly -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Thr -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Val 470 | Leu 470 | conflict |
| Ala 577 | Asp 577 | conflict |
| Ala 579 | Asp 579 | conflict |
| Leu 700 | Phe 700 | conflict |
| Ser 746 | Gly 746 | conflict |
| Gly 775 | - | expression tag |
| Ser 776 | - | expression tag |
| Gly 777 | - | expression tag |
| Asp 778 | - | expression tag |
| Tyr 779 | - | expression tag |
| Lys 780 | - | expression tag |
| Asp 781 | - | expression tag |
| Asp 782 | - | expression tag |
| Asp 783 | - | expression tag |
| Asp 784 | - | expression tag |
| Lys 785 | - | expression tag |
| Gly 786 | - | expression tag |
| Ser 787 | - | expression tag |
| Pro 788 | - | expression tag |
| Ser 789 | - | expression tag |
| Arg 790 | - | expression tag |
| Leu 791 | - | expression tag |
| Glu 792 | - | expression tag |
| Glu 793 | - | expression tag |
| Glu 794 | - | expression tag |
| Leu 795 | - | expression tag |
| Arg 796 | - | expression tag |
| Arg 797 | - | expression tag |
| Arg 798 | - | expression tag |
| Leu 799 | - | expression tag |
| Thr 800 | - | expression tag |
| Glu 801 | - | expression tag |
| Pro 802 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 111497.5 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 111562.9 |
