9VBK
Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | 5'-3' exonuclease PLD4 | polymer | 422 | 46287.3 | 4 | UniProt (Q96BZ4) | Homo sapiens (human) | (S,S)-bis(monoacylglycero)phosphate synthase PLD4,Phospholipase D family member 4,Phospholipase D4 |
| 2 | E, F (F, G) | DNA (5'-D(*TP*TP*T)-3') | polymer | 49 | 14860.5 | 2 | synthetic construct | ||
| 3 | G, H, I, J, K... (H, I, J, K, L...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 8 | In PDB GlyTouCan (G42666HT) | |||
| 4 | AA, BA, CA, DA, O... (C, D, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) | |||
| 5 | T (A) | THYMIDINE-3'-PHOSPHATE | non-polymer | 322.2 | 1 | Chemie (T3P) |
Sequence modifications
A, B, C, D: 91 - 506 (UniProt: Q96BZ4)
| PDB | External Database | Details |
|---|---|---|
| Leu 507 | - | expression tag |
| Glu 508 | - | expression tag |
| Val 509 | - | expression tag |
| Leu 510 | - | expression tag |
| Phe 511 | - | expression tag |
| Gln 512 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 214870.1 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 3395.2 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 3640.3 | |
| All* | Total formula weight | 221905.6 |
