9VBG

Cryo-EM structure of human PLD3 apo form

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B (A, B)	5'-3' exonuclease PLD3	polymer	436	48601.7	2	UniProt (Q8IV08)	Homo sapiens (human)	(S,S)-bis(monoacylglycero)phosphate synthase PLD3,HindIII K4L homolog,Hu-K4,Phospholipase D3
2	C, F (C, F)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	2	In PDB GlyTouCan (G15407YE)
3	D, G (D, G)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		910.8	2	In PDB GlyTouCan (G22768VO)
4	E, H (E, H)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
5	I, J, K, L (A, B)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	4	Chemie (NAG)

Sequence modifications

A, B: 61 - 490 (UniProt: Q8IV08)

PDB	External Database	Details
Leu 491	-	expression tag
Glu 492	-	expression tag
Val 493	-	expression tag
Leu 494	-	expression tag
Phe 495	-	expression tag
Gln 496	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	97203.3
Branched	Number of molecules	6
	Total formula weight	3843.5
Non-Polymers*	Number of molecules	4
	Total formula weight	884.8
All*	Total formula weight	101931.7

*Water molecules are not included.