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9V5P

Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (cytosine-5)-methyltransferase 1polymer919103882.11UniProt (P26358)
Pfam (PF01426)
Pfam (PF00145)
Homo sapiens (human)Dnmt1,CXXC-type zinc finger protein 9,DNA methyltransferase HsaI,DNA MTase HsaI,M.HsaI,MCMT
2B
(E)
DNA (5'-D(*CP*CP*TP*TP*CP*CP*GP*TP*AP*AP*GP*T)-3')polymer123613.41Homo sapiens
3C
(B)
DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3')polymer123725.51Homo sapiens
4D, E
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
PubChem (32051)
5F
(A)
S-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.41Chemie (SAH)
PubChem (439155)
6G
(E)
(2~{R})-2-[3,5-dicyano-1-[2-[2-(dimethylamino)ethyl-methyl-amino]-2-oxidanylidene-ethyl]-4-ethyl-pyrrolo[2,3-b]pyridin-6-yl]sulfanyl-2-(4-methoxyphenyl)ethanamidenon-polymer533.61Chemie (A1EQ2)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight111221.0
Non-Polymers*Number of molecules4
Total formula weight1048.9
All*Total formula weight112269.9
*Water molecules are not included.

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PDB entries from 2026-06-10

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