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9V5P

Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (cytosine-5)-methyltransferase 1polymer919103882.11UniProt (P26358)Homo sapiens (human)Dnmt1,CXXC-type zinc finger protein 9,DNA methyltransferase HsaI,DNA MTase HsaI,M.HsaI,MCMT
2B
(E)
DNA (5'-D(*CP*CP*TP*TP*CP*CP*GP*TP*AP*AP*GP*T)-3')polymer123613.41Homo sapiens
3C
(B)
DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3')polymer123725.51Homo sapiens
4D, E
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
5F
(A)
S-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.41Chemie (SAH)
PubChem (193)
PubChem (13792)
PubChem (189149)
PubChem (439155)
PubChem (5284331)
PubChem (71170554)
PubChem (13231890)
PubChem (16760024)
PubChem (25210495)
PubChem (44361184)
PubChem (177678424)
PubChem (46936206)
PubChem (21125603)
PubChem (25203782)
PubChem (52224400)
PubChem (50989525)
PubChem (51380914)
PubChem (52224398)
PubChem (6419189)
PubChem (57544532)
PubChem (59046843)
PubChem (59170628)
PubChem (164157219)
PubChem (59576228)
PubChem (66805708)
PubChem (70689219)
PubChem (70702054)
PubChem (70832431)
PubChem (118374891)
PubChem (118560068)
PubChem (126969526)
PubChem (129105892)
PubChem (143518505)
PubChem (154578335)
PubChem (163054214)
PubChem (163335525)
6G
(E)
(2~{R})-2-[3,5-dicyano-1-[2-[2-(dimethylamino)ethyl-methyl-amino]-2-oxidanylidene-ethyl]-4-ethyl-pyrrolo[2,3-b]pyridin-6-yl]sulfanyl-2-(4-methoxyphenyl)ethanamidenon-polymer533.61Chemie (A1EQ2)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight111221.0
Non-Polymers*Number of molecules4
Total formula weight1048.9
All*Total formula weight112269.9
*Water molecules are not included.

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PDB entries from 2026-04-08

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