9V2V
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Transcriptional regulatory protein SIN3 | polymer | 683 | 80758.4 | 2 | UniProt (P22579) | Saccharomyces cerevisiae S288C | |
| 2 | C, D (C, D) | Histone deacetylase RPD3 | polymer | 385 | 43524.3 | 2 | UniProt (P32561) | Saccharomyces cerevisiae S288C | Transcriptional regulatory protein RPD3 |
| 3 | E (E) | Transcriptional regulatory protein DEP1 | polymer | 119 | 14553.6 | 1 | UniProt (P31385) | Saccharomyces cerevisiae S288C | |
| 4 | F (F) | Transcriptional regulatory protein SDS3 | polymer | 311 | 35851.2 | 1 | UniProt (P40505) | Saccharomyces cerevisiae S288C | Suppressor of defective silencing protein 3 |
| 5 | G (G) | Transcriptional regulatory protein SAP30 | polymer | 121 | 14480.3 | 1 | UniProt (P38429) | Saccharomyces cerevisiae S288C | |
| 6 | H (H) | Transcriptional regulatory protein RXT3 | polymer | 211 | 23933.8 | 1 | UniProt (Q07458) | Saccharomyces cerevisiae S288C | |
| 7 | I (I) | Transcriptional regulatory protein PHO23 | polymer | 105 | 12360.2 | 1 | UniProt (P50947) | Saccharomyces cerevisiae S288C | |
| 8 | J (J) | Transcriptional regulatory protein RXT2 | polymer | 218 | 24683.8 | 1 | UniProt (P38255) | Saccharomyces cerevisiae S288C | |
| 9 | K (K) | Histone deacetylase complex subunit CTI6 | polymer | 249 | 28742.3 | 1 | UniProt (Q08923) | Saccharomyces cerevisiae S288C | CYC8-TUP1-interacting protein 6,Transcriptional regulatory protein CTI6 |
| 10 | L, P (O, S) | Histone H2A | polymer | 107 | 11722.7 | 2 | UniProt (Q6AZJ8) | Xenopus laevis (African clawed frog) | |
| 11 | M, Q (P, T) | Histone H2B | polymer | 93 | 10407.0 | 2 | UniProt (A0A8J1LZU9) | Xenopus laevis (African clawed frog) | |
| 12 | N, R (Q, U) | Histone H3 | polymer | 98 | 11560.5 | 2 | UniProt (A0A310TTQ1) | Xenopus laevis (African clawed frog) | |
| 13 | O, S (R, V) | Histone H4 | polymer | 79 | 9066.6 | 2 | UniProt (P62799) | Xenopus laevis (African clawed frog) | |
| 14 | T (X) | DNA (155-MER) | polymer | 155 | 48115.7 | 1 | synthetic construct | ||
| 15 | U (Y) | DNA (155-MER) | polymer | 155 | 47577.3 | 1 | synthetic construct | ||
| 16 | V (C) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 584377.0 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 584442.4 |
