9V26
Cryo- EM structure of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica bound to antibiotic paromomycin
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (lA) | 25S rRNA | polymer | 3503 | 1130459.9 | 1 | GenBank (BDEQ01000001) | Entamoeba histolytica HM-1:IMSS | |
| 2 | B (lB) | 5.8S rRNA | polymer | 155 | 49892.6 | 1 | GenBank (415339) | Entamoeba histolytica HM-1:IMSS | |
| 3 | C (lC) | 5S rRNA | polymer | 117 | 37450.1 | 1 | GenBank (61658858) | Entamoeba histolytica HM-1:IMSS | |
| 4 | D (lD) | Large ribosomal subunit protein uL2 | polymer | 257 | 27850.0 | 1 | UniProt (O15574) Pfam (PF00181) Pfam (PF03947) | Entamoeba histolytica HM-1:IMSS | 60S ribosomal protein L2,60S ribosomal protein L8 |
| 5 | E (lE) | 60S ribosomal protein L3, putative | polymer | 402 | 45620.4 | 1 | UniProt (C4LW09) Pfam (PF00297) | Entamoeba histolytica HM-1:IMSS | |
| 6 | F (lF) | 60S ribosomal protein L4, putative | polymer | 431 | 47430.1 | 1 | UniProt (B1N384) Pfam (PF00573) Pfam (PF14374) | Entamoeba histolytica HM-1:IMSS | |
| 7 | G (lG) | 60S ribosomal protein L5, putative | polymer | 286 | 32437.8 | 1 | UniProt (C4LU56) Pfam (PF17144) Pfam (PF14204) | Entamoeba histolytica HM-1:IMSS | |
| 8 | H (lH) | Large ribosomal subunit protein eL6 | polymer | 204 | 22958.3 | 1 | UniProt (O15595) Pfam (PF01159) | Entamoeba histolytica HM-1:IMSS | 60S ribosomal protein L6 |
| 9 | I (lI) | 60S ribosomal protein L7, putative | polymer | 230 | 25765.8 | 1 | UniProt (C4M751) Pfam (PF00327) | Entamoeba histolytica HM-1:IMSS | |
| 10 | J (lJ) | 60S ribosomal protein L7a | polymer | 286 | 32313.9 | 1 | UniProt (C4LVH6) Pfam (PF01248) | Entamoeba histolytica HM-1:IMSS | |
| 11 | K (lK) | 60S ribosomal protein L9, putative | polymer | 197 | 22351.9 | 1 | UniProt (C4LVZ9) Pfam (PF00347) | Entamoeba histolytica HM-1:IMSS | |
| 12 | L (lL) | Ribosomal protein L10, putative | polymer | 210 | 23831.2 | 1 | UniProt (C4LTA0) Pfam (PF00252) | Entamoeba histolytica HM-1:IMSS | |
| 13 | M (lM) | 60S ribosomal protein L11, putative | polymer | 174 | 19669.8 | 1 | UniProt (C4LZG9) Pfam (PF00281) Pfam (PF00673) | Entamoeba histolytica HM-1:IMSS | |
| 14 | N (lN) | 60S ribosomal protein L13, putative | polymer | 291 | 33028.4 | 1 | UniProt (C4M8R8) Pfam (PF01294) | Entamoeba histolytica HM-1:IMSS | |
| 15 | O (lO) | 60S ribosomal protein L13, putative | polymer | 205 | 23177.4 | 1 | UniProt (C4M3F3) Pfam (PF00572) | Entamoeba histolytica HM-1:IMSS | |
| 16 | P (lP) | 60S ribosomal protein L14, putative | polymer | 135 | 15161.1 | 1 | UniProt (C4M8C9) Pfam (PF00467) Pfam (PF01929) | Entamoeba histolytica HM-1:IMSS | |
| 17 | Q (lQ) | Ribosomal protein L15 | polymer | 205 | 23951.3 | 1 | UniProt (C4M7U2) Pfam (PF00827) | Entamoeba histolytica HM-1:IMSS | |
| 18 | R (lR) | 60S ribosomal protein L17, putative | polymer | 179 | 19892.4 | 1 | UniProt (C4LX05) Pfam (PF00237) | Entamoeba histolytica HM-1:IMSS | |
| 19 | S (lS) | 60S ribosomal protein L18, putative | polymer | 168 | 19038.8 | 1 | UniProt (C4LXC8) Pfam (PF17135) | Entamoeba histolytica HM-1:IMSS | |
| 20 | T (lT) | 60S ribosomal protein L18a | polymer | 173 | 20130.8 | 1 | UniProt (C4LXZ0) Pfam (PF01775) | Entamoeba histolytica HM-1:IMSS | |
| 21 | U (lU) | Ribosomal protein L19 | polymer | 198 | 22978.8 | 1 | UniProt (C4LWJ4) Pfam (PF01280) | Entamoeba histolytica HM-1:IMSS | |
| 22 | V (lV) | 60S ribosomal protein L21, putative | polymer | 166 | 18869.3 | 1 | UniProt (C4LV69) Pfam (PF01157) | Entamoeba histolytica HM-1:IMSS | |
| 23 | W (lW) | Large ribosomal subunit protein eL22 | polymer | 137 | 15877.6 | 1 | UniProt (C4LW40) Pfam (PF01776) | Entamoeba histolytica HM-1:IMSS | 60S ribosomal protein L22 |
| 24 | X (lX) | 60S ribosomal protein L23, putative | polymer | 140 | 15260.8 | 1 | UniProt (C4LVB0) Pfam (PF00238) | Entamoeba histolytica HM-1:IMSS | |
| 25 | Y (lY) | Ribosomal protein L23A, putative | polymer | 121 | 13694.3 | 1 | UniProt (C4LV64) Pfam (PF00276) | Entamoeba histolytica HM-1:IMSS | |
| 26 | Z (lZ) | 60S ribosomal protein L24, putative | polymer | 163 | 18650.0 | 1 | UniProt (C4LSA0) Pfam (PF01246) | Entamoeba histolytica HM-1:IMSS | |
| 27 | AA (la) | 60S ribosomal protein L26, putative | polymer | 213 | 23898.7 | 1 | UniProt (C4LSU3) Pfam (PF16906) | Entamoeba histolytica HM-1:IMSS | |
| 28 | BA (lb) | 60S ribosomal protein L27, putative | polymer | 139 | 15786.7 | 1 | UniProt (C4M727) Pfam (PF00467) Pfam (PF01777) | Entamoeba histolytica HM-1:IMSS | |
| 29 | CA (lc) | Large ribosomal subunit protein uL15A | polymer | 149 | 17042.8 | 1 | UniProt (Q9BI06) Pfam (PF00828) | Entamoeba histolytica HM-1:IMSS | 60S ribosomal protein L27a-1 |
| 30 | DA (ld) | 60S ribosomal protein L29 | polymer | 64 | 7340.6 | 1 | UniProt (C4LUN3) Pfam (PF01779) | Entamoeba histolytica HM-1:IMSS | |
| 31 | EA (le) | 60S ribosomal protein L30, putative | polymer | 109 | 11629.4 | 1 | UniProt (C4M919) Pfam (PF01248) | Entamoeba histolytica HM-1:IMSS | |
| 32 | FA (lf) | 60S ribosomal protein L31, putative | polymer | 150 | 17281.6 | 1 | UniProt (C4LU13) Pfam (PF01198) | Entamoeba histolytica HM-1:IMSS | |
| 33 | GA (lg) | 60S ribosomal protein L32, putative | polymer | 134 | 15572.6 | 1 | UniProt (C4LT96) Pfam (PF01655) | Entamoeba histolytica HM-1:IMSS | |
| 34 | HA (lh) | 60S ribosomal protein L34, putative | polymer | 137 | 15481.4 | 1 | UniProt (C4LYA7) Pfam (PF01199) | Entamoeba histolytica HM-1:IMSS | |
| 35 | IA (li) | uL29 | polymer | 122 | 13925.8 | 1 | Entamoeba histolytica HM-1:IMSS | ||
| 36 | JA (lj) | 60S ribosomal protein L35a, putative | polymer | 108 | 12143.3 | 1 | UniProt (B1N4V3) Pfam (PF01247) | Entamoeba histolytica HM-1:IMSS | |
| 37 | KA (lk) | 60S ribosomal protein L36, putative | polymer | 104 | 11942.1 | 1 | UniProt (C4LZH1) Pfam (PF01158) | Entamoeba histolytica HM-1:IMSS | |
| 38 | LA (ll) | 60S ribosomal protein L37-A, putative | polymer | 77 | 9046.8 | 1 | UniProt (C4M0X0) Pfam (PF01907) | Entamoeba histolytica HM-1:IMSS | |
| 39 | MA (lm) | 60S ribosomal protein L37a, putative | polymer | 93 | 10321.3 | 1 | UniProt (A0A175JXH6) Pfam (PF01780) | Entamoeba histolytica HM-1:IMSS | |
| 40 | NA (ln) | 60S ribosomal protein L38 putative | polymer | 77 | 8795.6 | 1 | UniProt (A0A175JTS8) Pfam (PF01781) | Entamoeba histolytica HM-1:IMSS | |
| 41 | OA (lo) | Ribosomal protein L39, putative | polymer | 51 | 6282.5 | 1 | UniProt (C4LTA2) Pfam (PF00832) | Entamoeba histolytica HM-1:IMSS | |
| 42 | PA (lp) | 60S ribosomal protein L40, putative | polymer | 56 | 6482.9 | 1 | UniProt (C4LV09) Pfam (PF01020) | Entamoeba histolytica HM-1:IMSS | |
| 43 | QA (lq) | 60S ribosomal protein L44, putative | polymer | 98 | 11603.0 | 1 | UniProt (C4LS99) Pfam (PF00935) | Entamoeba histolytica HM-1:IMSS | |
| 44 | RA (sA) | 40S ribosomal protein S25 | polymer | 137 | 14794.7 | 1 | UniProt (C4M9F4) Pfam (PF03297) | Entamoeba histolytica HM-1:IMSS | |
| 45 | SA (sB) | 40S ribosomal protein S26 | polymer | 144 | 16455.4 | 1 | UniProt (C4M7G9) Pfam (PF01283) | Entamoeba histolytica HM-1:IMSS | |
| 46 | TA (sC) | Small ribosomal subunit protein eS27 | polymer | 84 | 9338.1 | 1 | UniProt (P38654) Pfam (PF01667) | Entamoeba histolytica HM-1:IMSS | 40S ribosomal protein S27,EHZC3 protein |
| 47 | UA (sD) | 40S ribosomal protein S28, putative | polymer | 69 | 7746.0 | 1 | UniProt (C4LZQ8) Pfam (PF01200) | Entamoeba histolytica HM-1:IMSS | |
| 48 | VA (sE) | Ribosomal protein S29, putative | polymer | 56 | 6472.5 | 1 | UniProt (C4LW10) Pfam (PF00253) | Entamoeba histolytica HM-1:IMSS | |
| 49 | WA (sI) | A/P-tRNA | polymer | 76 | 24483.6 | 1 | Entamoeba histolytica HM-1:IMSS | ||
| 50 | XA (sJ) | P/E-tRNA | polymer | 77 | 24632.6 | 1 | Entamoeba histolytica HM-1:IMSS | ||
| 51 | YA (sK) | mRNA | polymer | 10 | 3194.0 | 1 | Entamoeba histolytica HM-1:IMSS | ||
| 52 | ZA (sa) | 17S rRNA | polymer | 1947 | 628401.8 | 1 | GenBank (BDEQ01000001) | Entamoeba histolytica HM-1:IMSS | |
| 53 | AB (sc) | Small ribosomal subunit protein uS5 | polymer | 255 | 27737.3 | 1 | UniProt (C4M7U0) Pfam (PF00333) Pfam (PF03719) | Entamoeba histolytica HM-1:IMSS | 40S ribosomal protein S2 |
| 54 | BB (sd) | 40S ribosomal protein S3 | polymer | 244 | 26977.7 | 1 | UniProt (C4LT02) Pfam (PF07650) Pfam (PF00189) | Entamoeba histolytica HM-1:IMSS | |
| 55 | CB (se) | Small ribosomal subunit protein eS1 | polymer | 256 | 29094.2 | 1 | UniProt (C4M609) Pfam (PF01015) | Entamoeba histolytica HM-1:IMSS | |
| 56 | DB (sf) | 40S ribosomal protein S4, putative | polymer | 326 | 36830.8 | 1 | UniProt (C4LYF4) Pfam (PF08071) Pfam (PF00900) Pfam (PF16121) | Entamoeba histolytica HM-1:IMSS | |
| 57 | EB (sg) | Small ribosomal subunit protein uS7 | polymer | 206 | 23072.9 | 1 | UniProt (O15587) Pfam (PF00177) | Entamoeba histolytica HM-1:IMSS | 40S ribosomal protein S5 |
| 58 | FB (sh) | 40S ribosomal protein S6 | polymer | 266 | 29822.2 | 1 | UniProt (C4LXN2) Pfam (PF01092) | Entamoeba histolytica HM-1:IMSS | |
| 59 | GB (si) | 40S ribosomal protein S7 | polymer | 201 | 21999.3 | 1 | UniProt (C4M9F9) Pfam (PF01251) | Entamoeba histolytica HM-1:IMSS | |
| 60 | HB (sj) | 40S ribosomal protein S8 | polymer | 237 | 27017.4 | 1 | UniProt (C4M8Y8) Pfam (PF01201) | Entamoeba histolytica HM-1:IMSS | |
| 61 | IB (sk) | Small ribosomal subunit protein uS4 | polymer | 185 | 21548.5 | 1 | UniProt (O15612) Pfam (PF00163) Pfam (PF01479) | Entamoeba histolytica HM-1:IMSS | 40S ribosomal protein S9 |
| 62 | JB (sl) | 40S ribosomal protein S10, putative | polymer | 127 | 14575.3 | 1 | UniProt (C4LVC0) Pfam (PF03501) | Entamoeba histolytica HM-1:IMSS | |
| 63 | KB (sm) | 40S ribosomal protein S11, putative | polymer | 156 | 18248.1 | 1 | UniProt (C4M979) Pfam (PF16205) Pfam (PF00366) | Entamoeba histolytica HM-1:IMSS | |
| 64 | LB (so) | 40S ribosomal protein S13, putative | polymer | 151 | 17038.3 | 1 | UniProt (A0A175JJM9) Pfam (PF08069) Pfam (PF00312) | Entamoeba histolytica HM-1:IMSS | |
| 65 | MB (sp) | Ribosomal protein S14, putative | polymer | 146 | 15670.1 | 1 | UniProt (B1N2I3) Pfam (PF00411) | Entamoeba histolytica HM-1:IMSS | |
| 66 | NB (sq) | 40S ribosomal protein S15, putative | polymer | 144 | 16405.5 | 1 | UniProt (C4M7H3) Pfam (PF00203) | Entamoeba histolytica HM-1:IMSS | |
| 67 | OB (sr) | 40S ribosomal protein S15a, putative | polymer | 130 | 14692.1 | 1 | UniProt (C4LXM0) Pfam (PF00410) | Entamoeba histolytica HM-1:IMSS | |
| 68 | PB (ss) | 40S ribosomal protein S16, putative | polymer | 158 | 17547.8 | 1 | UniProt (C4M2R7) Pfam (PF00380) | Entamoeba histolytica HM-1:IMSS | |
| 69 | QB (st) | 40S ribosomal protein S17, putative | polymer | 117 | 13618.0 | 1 | UniProt (C4M0Z2) Pfam (PF00833) | Entamoeba histolytica HM-1:IMSS | |
| 70 | RB (su) | Small ribosomal subunit protein uS13 | polymer | 155 | 17698.6 | 1 | UniProt (P48151) Pfam (PF00416) | Entamoeba histolytica HM-1:IMSS | 40S ribosomal protein S18 |
| 71 | SB (sv) | Small ribosomal subunit protein eS19 | polymer | 155 | 17776.8 | 1 | UniProt (O15631) Pfam (PF01090) | Entamoeba histolytica HM-1:IMSS | 40S ribosomal protein S19 |
| 72 | TB (sw) | 40S ribosomal protein S20, putative | polymer | 118 | 13258.7 | 1 | UniProt (C4M5V7) Pfam (PF00338) | Entamoeba histolytica HM-1:IMSS | |
| 73 | UB (sx) | 40S ribosomal protein S21 | polymer | 86 | 9582.1 | 1 | UniProt (C4LWW3) Pfam (PF01249) | Entamoeba histolytica HM-1:IMSS | |
| 74 | VB (sy) | 40S ribosomal protein S23, putative | polymer | 141 | 15745.5 | 1 | UniProt (C4M5B7) Pfam (PF00164) | Entamoeba histolytica HM-1:IMSS | |
| 75 | WB (sa) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 74 |
| Total formula weight | 3173795.7 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 615.6 | |
| All* | Total formula weight | 3174411.4 |
